Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.63□□□□□ -1.67
LMX1BO60663 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC4.63□□□□□ -1.67
LMX1BO60663 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.63□□□□□ -1.67
LMX1BO60663 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC4.63□□□□□ -1.67
LMX1BO60663 MAPK10-338ENST00000641647 3362 ntBASIC4.63□□□□□ -1.67
LMX1BO60663 AC125336.1-201ENST00000508893 2827 ntBASIC4.63□□□□□ -1.67
LMX1BO60663 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.63□□□□□ -1.67
LMX1BO60663 OR9K1P-202ENST00000641111 3217 ntBASIC4.63□□□□□ -1.67
LMX1BO60663 ICE2P1-201ENST00000512800 1849 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
LMX1BO60663 U8.4-201ENST00000363626 134 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 RN7SKP103-201ENST00000363848 320 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.62□□□□□ -1.67
LMX1BO60663 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC136624.1-201ENST00000400791 413 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AL589647.1-201ENST00000402485 466 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AL133388.1-201ENST00000404509 287 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 AL590762.4-201ENST00000425885 253 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.62□□□□□ -1.67
LMX1BO60663 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC005033.1-201ENST00000428904 813 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 VN1R54P-201ENST00000435210 1049 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC006994.1-201ENST00000438212 839 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 AL122001.1-201ENST00000457027 370 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 CYCSP20-201ENST00000473154 315 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC020898.1-201ENST00000474167 787 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AP000797.2-201ENST00000475768 606 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC015864.1-201ENST00000496512 544 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 PPM1AP1-201ENST00000502740 1135 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 SNORA19.3-201ENST00000516165 130 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 RN7SKP66-201ENST00000516681 231 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 SCARNA16.4-201ENST00000516956 187 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC010476.1-201ENST00000519111 851 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC010376.1-201ENST00000522101 334 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC100784.1-201ENST00000522790 310 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC091515.1-201ENST00000548110 679 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC008147.3-201ENST00000548666 354 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AL132857.1-201ENST00000555180 708 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 CLMN-206ENST00000556441 452 ntTSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 RN7SL356P-201ENST00000582228 248 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC4.62□□□□□ -1.67
LMX1BO60663 AC107993.1-201ENST00000591343 684 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC010503.3-201ENST00000594355 540 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC104785.1-201ENST00000603220 588 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AL160237.3-201ENST00000604114 1013 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 QTRT1P1-201ENST00000604344 1078 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC011626.1-201ENST00000604710 562 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 AL049539.1-201ENST00000611964 459 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AP002505.2-201ENST00000623585 696 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC093875.1-201ENST00000623688 504 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 AC112198.2-201ENST00000426589 6996 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 LINC01963-201ENST00000562038 3148 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 AC004817.4-201ENST00000602396 3625 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.62□□□□□ -1.67
LMX1BO60663 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.62□□□□□ -1.67
LMX1BO60663 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
LMX1BO60663 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LMX1BO60663 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.61□□□□□ -1.67
LMX1BO60663 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LMX1BO60663 OR10AB1P-202ENST00000641219 1686 ntBASIC4.61□□□□□ -1.67
LMX1BO60663 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
LMX1BO60663 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LMX1BO60663 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
LMX1BO60663 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.61□□□□□ -1.67
LMX1BO60663 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 155.6 ms