Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.81□□□□□ -1.64
SSX4O60224 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SSX4O60224 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SSX4O60224 AC104623.2-202ENST00000623477 4002 ntBASIC4.81□□□□□ -1.64
SSX4O60224 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
SSX4O60224 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
SSX4O60224 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
SSX4O60224 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SSX4O60224 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
SSX4O60224 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
SSX4O60224 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.8□□□□□ -1.64
SSX4O60224 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SSX4O60224 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SSX4O60224 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SSX4O60224 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SSX4O60224 SNORA58B-201ENST00000364259 136 ntBASIC4.8□□□□□ -1.64
SSX4O60224 RN7SKP28-201ENST00000364770 305 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC4.8□□□□□ -1.64
SSX4O60224 RNU6-481P-201ENST00000384194 107 ntBASIC4.8□□□□□ -1.64
SSX4O60224 MIR223-201ENST00000385204 110 ntBASIC4.8□□□□□ -1.64
SSX4O60224 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SSX4O60224 ATF1P1-201ENST00000406040 927 ntBASIC4.8□□□□□ -1.64
SSX4O60224 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 RNA5SP487-201ENST00000410186 122 ntBASIC4.8□□□□□ -1.64
SSX4O60224 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 RPS6P23-201ENST00000413224 722 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AL445183.3-201ENST00000414168 502 ntBASIC4.8□□□□□ -1.64
SSX4O60224 MTCO3P4-201ENST00000419236 787 ntBASIC4.8□□□□□ -1.64
SSX4O60224 FO393419.3-201ENST00000428741 282 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.8□□□□□ -1.64
SSX4O60224 MTCO1P52-201ENST00000433928 531 ntBASIC4.8□□□□□ -1.64
SSX4O60224 PTMAP6-201ENST00000439110 327 ntBASIC4.8□□□□□ -1.64
SSX4O60224 RPL34P26-201ENST00000445636 354 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AL096829.2-201ENST00000446582 742 ntBASIC4.8□□□□□ -1.64
SSX4O60224 GXYLT1P1-201ENST00000446657 490 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.8□□□□□ -1.64
SSX4O60224 HMGB1P26-201ENST00000452520 628 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.8□□□□□ -1.64
SSX4O60224 AC011225.1-201ENST00000457751 369 ntBASIC4.8□□□□□ -1.64
SSX4O60224 COPS8P2-201ENST00000473228 627 ntBASIC4.8□□□□□ -1.64
SSX4O60224 RN7SL583P-201ENST00000475692 287 ntBASIC4.8□□□□□ -1.64
SSX4O60224 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 RPS4XP1-201ENST00000482189 787 ntBASIC4.8□□□□□ -1.64
SSX4O60224 RPS3AP15-201ENST00000483874 781 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AC006499.3-201ENST00000506077 748 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 HMGN1P9-201ENST00000515212 298 ntBASIC4.8□□□□□ -1.64
SSX4O60224 RPS27AP18-201ENST00000515536 459 ntBASIC4.8□□□□□ -1.64
SSX4O60224 CDC42P3-201ENST00000518493 633 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AP003355.1-201ENST00000518956 587 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 BUD31P1-201ENST00000521828 359 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AC008083.2-201ENST00000546707 476 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SSX4O60224 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AL512329.2-201ENST00000607350 548 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AP005229.2-201ENST00000609980 697 ntBASIC4.8□□□□□ -1.64
SSX4O60224 AC037198.3-201ENST00000616754 526 ntBASIC4.8□□□□□ -1.64
SSX4O60224 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.8□□□□□ -1.64
SSX4O60224 AC132068.1-201ENST00000623805 459 ntBASIC4.8□□□□□ -1.64
SSX4O60224 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 SAMMSON-209ENST00000641222 1100 ntBASIC4.8□□□□□ -1.64
SSX4O60224 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.8□□□□□ -1.64
SSX4O60224 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SSX4O60224 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
SSX4O60224 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SSX4O60224 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SSX4O60224 CCT8P1-201ENST00000413611 1657 ntBASIC4.8□□□□□ -1.64
SSX4O60224 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.8□□□□□ -1.64
SSX4O60224 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SSX4O60224 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SSX4O60224 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.79□□□□□ -1.64
SSX4O60224 PABPC1P6-201ENST00000445594 1829 ntBASIC4.79□□□□□ -1.64
SSX4O60224 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SSX4O60224 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SSX4O60224 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SSX4O60224 AL360270.2-201ENST00000562952 5985 ntBASIC4.79□□□□□ -1.64
SSX4O60224 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SSX4O60224 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC4.79□□□□□ -1.64
SSX4O60224 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.79□□□□□ -1.64
SSX4O60224 RNU6-452P-201ENST00000384406 107 ntBASIC4.79□□□□□ -1.64
SSX4O60224 RNU6-185P-201ENST00000384421 107 ntBASIC4.79□□□□□ -1.64
SSX4O60224 MIR142-201ENST00000384835 87 ntBASIC4.79□□□□□ -1.64
SSX4O60224 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms