Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 RPL21P132-201ENST00000331267 462 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 Y_RNA.248-201ENST00000364501 109 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 RNA5SP88-201ENST00000365560 109 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HOXA3O43365 MIR323B-201ENST00000385269 82 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 MIR541-201ENST00000401360 84 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 MTCO3P31-201ENST00000405526 789 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AL139805.1-201ENST00000407837 289 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC234781.4-201ENST00000419384 244 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXA3O43365 LINC01435-201ENST00000425050 722 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 OFD1P12Y-201ENST00000427963 1207 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 RPSAP65-201ENST00000429660 595 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AL596276.1-201ENST00000434465 418 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC003989.1-201ENST00000434569 565 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 CYCSP11-201ENST00000436426 315 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC091862.1-201ENST00000438016 1100 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 LAMTOR5-AS1-201ENST00000444238 881 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC009963.3-201ENST00000458090 486 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC094085.1-201ENST00000468914 584 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC068522.1-201ENST00000482895 345 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC011352.3-201ENST00000505162 593 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC108475.1-201ENST00000507880 950 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 RNU6-885P-201ENST00000516607 104 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC025881.1-201ENST00000518851 512 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 NPM1P6-201ENST00000521088 871 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 AL157871.6-201ENST00000553954 206 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 AL357153.3-201ENST00000553982 611 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 FXNP1-201ENST00000555153 337 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 PCMTD1P2-201ENST00000565017 355 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 GLYATL1P2-202ENST00000588046 902 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 AL138895.2-201ENST00000603019 178 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXA3O43365 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 AC241377.1-201ENST00000619797 406 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 MRPL57P1-201ENST00000621486 265 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HOXA3O43365 MKKS-204ENST00000639674 192 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 LINC01224-203ENST00000596283 2766 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 AL355377.1-201ENST00000621125 1653 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 AC107982.1-201ENST00000507171 1300 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXA3O43365 MTCO1P23-201ENST00000415223 1526 ntBASIC5.17□□□□□ -1.58
HOXA3O43365 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXA3O43365 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXA3O43365 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC5.16□□□□□ -1.58
HOXA3O43365 MYBPC1-223ENST00000553190 3777 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HOXA3O43365 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HOXA3O43365 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 CASC19-228ENST00000641414 1684 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXA3O43365 AC068870.3-201ENST00000625077 2536 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXA3O43365 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
HOXA3O43365 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HOXA3O43365 FAM32BP-201ENST00000344033 333 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 RNU6-348P-201ENST00000384386 107 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AC007066.1-201ENST00000392902 381 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 OR6C69P-201ENST00000394268 893 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AL157702.1-201ENST00000398764 426 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXA3O43365 MIR548F1-201ENST00000408667 84 ntBASIC5.16□□□□□ -1.58
HOXA3O43365 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 182.1 ms