Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 CASC19-281ENST00000642118 1554 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC025574.1-201ENST00000554784 1653 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC017079.1-201ENST00000333650 415 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AMELX-201ENST00000348912 737 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 RNA5SP132-201ENST00000364725 118 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 RNU6-244P-201ENST00000391028 104 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 RNU6-796P-201ENST00000391086 107 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 GAPDHP15-201ENST00000398586 975 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC069282.1-201ENST00000411911 526 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC010385.1-201ENST00000412374 256 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AP000534.2-201ENST00000412729 568 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AL158050.1-201ENST00000416077 457 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AL355433.1-201ENST00000422804 300 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AL354692.1-201ENST00000423044 315 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 RNF2P1-201ENST00000442955 1010 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 SPRYD7P1-201ENST00000443861 570 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 PSMC1P13-201ENST00000458195 985 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 RN7SL177P-201ENST00000476596 299 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC090638.1-201ENST00000498296 909 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC068339.2-201ENST00000534395 618 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC015720.2-201ENST00000567709 334 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 MIR8080-201ENST00000622224 89 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC006840.1-201ENST00000623069 542 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.48□□□□□ -1.69
NKX3-1Q99801 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 RLIMP2-201ENST00000427891 1563 ntBASIC4.48□□□□□ -1.69
NKX3-1Q99801 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NKX3-1Q99801 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL672167.1-203ENST00000641299 2975 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 MTCO1P4-201ENST00000520516 1409 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC021242.1-201ENST00000507315 2035 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 RNU4-7P-201ENST00000364758 141 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 RNU6-1320P-201ENST00000390838 107 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 RNU6-1269P-201ENST00000391139 107 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL390316.1-201ENST00000406279 553 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 RPL35AP24-201ENST00000413846 330 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC4.47□□□□□ -1.69
NKX3-1Q99801 OR6C64P-201ENST00000419708 825 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NKX3-1Q99801 CFL1P1-202ENST00000432948 411 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 CYCSP6-201ENST00000434498 302 ntBASIC4.47□□□□□ -1.69
NKX3-1Q99801 CYCSP24-201ENST00000445119 316 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms