Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 MLH1-216ENST00000458205 2608 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
HOXD11P31277 NDUFAF5-202ENST00000378106 5529 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
HOXD11P31277 AC114980.1-201ENST00000505668 3157 ntBASIC9.46□□□□□ -0.89
HOXD11P31277 SV2C-202ENST00000502798 11035 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
HOXD11P31277 PLG-202ENST00000308192 2741 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
HOXD11P31277 MATN2-213ENST00000522025 2731 ntTSL 5 BASIC9.46□□□□□ -0.89
HOXD11P31277 ATP7B-205ENST00000418097 4340 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 RNU6-103P-201ENST00000363686 107 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 RNU6-14P-201ENST00000384630 106 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 TRBV27-201ENST00000390399 387 ntAPPRIS P1 BASIC9.46□□□□□ -0.9
HOXD11P31277 SNORA40.5-201ENST00000391061 128 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 SMIM2-201ENST00000400419 822 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 HMGA1P6-201ENST00000418454 391 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC9.46□□□□□ -0.9
HOXD11P31277 MTHFD2P3-201ENST00000423135 221 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 AL365356.3-201ENST00000427341 657 ntTSL 3 BASIC9.46□□□□□ -0.9
HOXD11P31277 RPS20P1-201ENST00000434853 354 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 LINC01076-201ENST00000435725 302 ntTSL 3 BASIC9.46□□□□□ -0.9
HOXD11P31277 AC009518.3-201ENST00000438972 253 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 AC092042.3-203ENST00000443313 950 ntTSL 2 BASIC9.46□□□□□ -0.9
HOXD11P31277 AL161454.1-201ENST00000446226 569 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 AC010655.1-201ENST00000449336 292 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 AC000067.1-201ENST00000452326 287 ntTSL 3 BASIC9.46□□□□□ -0.9
HOXD11P31277 RN7SL395P-201ENST00000462960 291 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 RN7SL91P-201ENST00000469313 291 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 RN7SL401P-201ENST00000470065 298 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 TUBB3P2-201ENST00000480063 232 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 RPL26P26-201ENST00000480251 434 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 RN7SL869P-201ENST00000497032 300 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC9.46□□□□□ -0.9
HOXD11P31277 SNORD33.1-201ENST00000516213 88 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC9.46□□□□□ -0.9
HOXD11P31277 AC004257.1-201ENST00000593588 277 ntTSL 5 BASIC9.46□□□□□ -0.9
HOXD11P31277 AC099518.6-201ENST00000617407 450 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 ADAR-201ENST00000368471 6515 ntAPPRIS ALT1 TSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 EPS15L1-212ENST00000597937 3486 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 AL354984.1-201ENST00000371169 1854 ntTSL 2 BASIC9.46□□□□□ -0.9
HOXD11P31277 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC9.46□□□□□ -0.9
HOXD11P31277 PRKAR1A-201ENST00000358598 3576 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 AF131215.5-201ENST00000530248 1939 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 GTF3C1-202ENST00000561623 7015 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 RORA-201ENST00000261523 1951 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 AC018555.1-201ENST00000567548 1980 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 NBPF25P-201ENST00000606775 2019 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 DENND2D-201ENST00000357640 2077 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 SLC13A3-210ENST00000472148 3283 ntTSL 5 BASIC9.46□□□□□ -0.9
HOXD11P31277 THSD4-AS1-202ENST00000562634 2182 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
HOXD11P31277 OR2A20P-204ENST00000641121 2173 ntBASIC9.46□□□□□ -0.9
HOXD11P31277 CTNNA2-218ENST00000541047 2870 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC9.45□□□□□ -0.9
HOXD11P31277 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 CCDC30-202ENST00000342022 3098 ntAPPRIS P2 TSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 MPI-202ENST00000352410 5828 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 REEP1-201ENST00000165698 3857 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 HOXA1-201ENST00000343060 2517 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 ZNF565-203ENST00000392173 1931 ntAPPRIS P2 TSL 2 BASIC9.45□□□□□ -0.9
HOXD11P31277 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 FAT4-201ENST00000335110 9669 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 AL731532.2-201ENST00000623542 1953 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 DIP2A-202ENST00000417564 6967 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 ANKRD20A11P-206ENST00000451663 3717 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 MCM8-204ENST00000378896 3769 ntAPPRIS P4 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 COMMD9-201ENST00000263401 2954 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 ATOX1-201ENST00000313115 488 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 RNU6-1272P-201ENST00000362776 107 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 RNU1-130P-201ENST00000363930 160 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 LY6G6D-223ENST00000375825 402 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 RNU6-741P-201ENST00000383889 107 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 U3.16-201ENST00000384391 209 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 MIR431-201ENST00000385266 114 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 U3.22-201ENST00000391120 215 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 RNA5SP221-201ENST00000411271 103 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 PHBP7-201ENST00000415677 814 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 LINC01811-201ENST00000415991 594 ntTSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 ATP5LP4-201ENST00000434169 307 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 RPS21P1-201ENST00000434479 247 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 COX5BP6-201ENST00000454311 211 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 RPS5P7-201ENST00000456664 608 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 AC104164.1-201ENST00000460282 590 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 LINC00881-202ENST00000471719 791 ntTSL 2 BASIC9.45□□□□□ -0.9
HOXD11P31277 RN7SL448P-201ENST00000475566 295 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC9.45□□□□□ -0.9
HOXD11P31277 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC9.45□□□□□ -0.9
HOXD11P31277 RNU6-191P-201ENST00000516295 94 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 RNA5SP75-201ENST00000516841 111 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 snoMBII-202.2-201ENST00000517263 86 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 TMEM262-206ENST00000530719 494 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
HOXD11P31277 AP004607.5-201ENST00000532034 217 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 TMEM269-202ENST00000536543 983 ntAPPRIS P2 TSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 BANF2-205ENST00000545418 360 ntTSL 3 BASIC9.45□□□□□ -0.9
HOXD11P31277 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 AP001178.3-201ENST00000585150 2106 ntTSL 2 BASIC9.45□□□□□ -0.9
HOXD11P31277 COX6CP7-201ENST00000597056 208 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 AC008814.1-201ENST00000603797 406 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 RFPL3-AS1_1.1-201ENST00000617561 88 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 GSN-AS1-201ENST00000414544 4763 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 NDUFS1-209ENST00000457011 2171 ntTSL 2 BASIC9.45□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms