Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 RPL21P65-201ENST00000406094 466 ntBASIC5.43□□□□□ -1.54
COL4A5P29400 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A5P29400 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.43□□□□□ -1.54
COL4A5P29400 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.43□□□□□ -1.54
COL4A5P29400 RPL35P6-201ENST00000490024 372 ntBASIC5.43□□□□□ -1.54
COL4A5P29400 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.43□□□□□ -1.54
COL4A5P29400 AC006116.5-201ENST00000591936 559 ntBASIC5.43□□□□□ -1.54
COL4A5P29400 AL354984.3-201ENST00000604803 325 ntBASIC5.43□□□□□ -1.54
COL4A5P29400 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
COL4A5P29400 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
COL4A5P29400 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
COL4A5P29400 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
COL4A5P29400 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A5P29400 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A5P29400 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.42□□□□□ -1.54
COL4A5P29400 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A5P29400 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A5P29400 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 ACTR3BP5-201ENST00000448440 1479 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.42□□□□□ -1.54
COL4A5P29400 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
COL4A5P29400 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.42□□□□□ -1.54
COL4A5P29400 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A5P29400 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.42□□□□□ -1.54
COL4A5P29400 PCAT14-202ENST00000627127 3935 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 AC008549.2-201ENST00000333482 706 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
COL4A5P29400 MIR554-201ENST00000384874 96 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.42□□□□□ -1.54
COL4A5P29400 VN1R105P-201ENST00000486595 910 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 TPT1P3-201ENST00000492841 512 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC5.42□□□□□ -1.54
COL4A5P29400 AC015912.2-201ENST00000571053 181 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.42□□□□□ -1.54
COL4A5P29400 MIR8059-201ENST00000620427 81 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 AC067931.1-201ENST00000624190 671 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 CDRT1-208ENST00000630868 794 ntBASIC5.42□□□□□ -1.54
COL4A5P29400 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A5P29400 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A5P29400 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
COL4A5P29400 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL4A5P29400 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.41□□□□□ -1.54
COL4A5P29400 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.41□□□□□ -1.54
COL4A5P29400 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A5P29400 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL4A5P29400 AC013429.2-201ENST00000418798 781 ntBASIC5.41□□□□□ -1.54
COL4A5P29400 RPS29P7-201ENST00000439662 171 ntBASIC5.41□□□□□ -1.54
COL4A5P29400 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC5.41□□□□□ -1.54
COL4A5P29400 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.41□□□□□ -1.54
COL4A5P29400 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.41□□□□□ -1.54
COL4A5P29400 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.41□□□□□ -1.54
COL4A5P29400 uc_338.13-201ENST00000618243 179 ntBASIC5.41□□□□□ -1.54
COL4A5P29400 AL445363.3-201ENST00000623080 671 ntBASIC5.41□□□□□ -1.54
COL4A5P29400 AC004777.1-201ENST00000624317 287 ntBASIC5.41□□□□□ -1.54
COL4A5P29400 AC006065.6-201ENST00000625201 545 ntBASIC5.41□□□□□ -1.54
COL4A5P29400 AC093829.1-201ENST00000506662 1618 ntBASIC5.41□□□□□ -1.54
COL4A5P29400 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.41□□□□□ -1.54
COL4A5P29400 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL4A5P29400 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.41□□□□□ -1.54
COL4A5P29400 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
COL4A5P29400 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
COL4A5P29400 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A5P29400 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A5P29400 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
COL4A5P29400 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A5P29400 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
COL4A5P29400 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.4□□□□□ -1.54
COL4A5P29400 MFSD13B-201ENST00000420133 1290 ntBASIC5.4□□□□□ -1.54
COL4A5P29400 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.4□□□□□ -1.54
COL4A5P29400 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC5.4□□□□□ -1.54
COL4A5P29400 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 AC012442.3-202ENST00000636742 206 ntBASIC5.4□□□□□ -1.54
COL4A5P29400 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 AL034370.1-201ENST00000397254 1590 ntBASIC5.4□□□□□ -1.54
COL4A5P29400 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 MAGI2-222ENST00000636039 5671 ntTSL 5 BASIC5.4□□□□□ -1.54
COL4A5P29400 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.4□□□□□ -1.54
COL4A5P29400 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
COL4A5P29400 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A5P29400 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
COL4A5P29400 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A5P29400 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A5P29400 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
COL4A5P29400 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A5P29400 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A5P29400 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A5P29400 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
COL4A5P29400 RNA5SP130-201ENST00000364431 114 ntBASIC5.4□□□□□ -1.55
COL4A5P29400 AL607077.1-201ENST00000401718 499 ntBASIC5.4□□□□□ -1.55
COL4A5P29400 RNU6-628P-201ENST00000410675 107 ntBASIC5.4□□□□□ -1.55
COL4A5P29400 VN1R34P-201ENST00000447387 883 ntBASIC5.4□□□□□ -1.55
COL4A5P29400 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.4□□□□□ -1.55
COL4A5P29400 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.4□□□□□ -1.55
COL4A5P29400 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.4□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms