Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 AL049779.2-201ENST00000553847 315 ntBASIC5.56□□□□□ -1.52
USP29Q9HBJ7 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 AC084373.1-201ENST00000603311 235 ntBASIC5.56□□□□□ -1.52
USP29Q9HBJ7 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 AL157392.4-201ENST00000609756 345 ntBASIC5.56□□□□□ -1.52
USP29Q9HBJ7 AC099654.6-201ENST00000636487 512 ntBASIC5.56□□□□□ -1.52
USP29Q9HBJ7 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 CASC19-222ENST00000641321 1173 ntBASIC5.56□□□□□ -1.52
USP29Q9HBJ7 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP29Q9HBJ7 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC107021.2-201ENST00000567714 2095 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AL353796.1-201ENST00000561542 3241 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 PABPC1P6-201ENST00000445594 1829 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 MIR223-201ENST00000385204 110 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AL592310.1-201ENST00000414330 671 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 SLC35E1P1-201ENST00000419313 864 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 FABP5P3-201ENST00000437960 408 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 MTCO1P53-201ENST00000441633 699 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AL161722.1-201ENST00000446972 1032 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AL031313.1-201ENST00000448435 256 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 RPL35AP19-201ENST00000469425 329 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC116562.1-201ENST00000485355 781 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 RPL15P21-201ENST00000495592 567 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC231760.1-201ENST00000498002 260 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 HPRT1P1-201ENST00000509498 657 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 IMPA1P1-201ENST00000510718 842 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 RNU6-276P-201ENST00000516114 96 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 CDC42P3-201ENST00000518493 633 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC027369.5-201ENST00000533838 755 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 OR8K4P-201ENST00000534608 872 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 HAUS8P1-201ENST00000549005 542 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC016839.1-201ENST00000578162 867 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 RN7SL290P-201ENST00000578661 300 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 SUGT1P3-202ENST00000604259 383 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC025811.1-201ENST00000604312 472 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AL450336.1-201ENST00000605180 586 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC079395.3-201ENST00000615161 484 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC009464.1-201ENST00000615731 469 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC005840.5-201ENST00000619166 599 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC132068.1-201ENST00000623805 459 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AP003400.3-201ENST00000624904 346 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 AC068870.3-201ENST00000625077 2536 ntBASIC5.55□□□□□ -1.52
USP29Q9HBJ7 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC5.55□□□□□ -1.52
USP29Q9HBJ7 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP29Q9HBJ7 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.54□□□□□ -1.52
USP29Q9HBJ7 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
USP29Q9HBJ7 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
USP29Q9HBJ7 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
USP29Q9HBJ7 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
USP29Q9HBJ7 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP29Q9HBJ7 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 135.8 ms