Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
USP39Q53GS9 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
USP39Q53GS9 RNU6-867P-201ENST00000364956 107 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
USP39Q53GS9 RNU5A-2P-201ENST00000384337 116 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AL603865.2-201ENST00000401679 213 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AL021407.1-201ENST00000404531 386 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 TANK-206ENST00000406287 875 ntTSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 MIR1286-201ENST00000408112 78 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 RN7SKP29-201ENST00000410957 272 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AL596448.1-201ENST00000415024 392 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 RPS4XP5-201ENST00000419038 768 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AC007394.1-201ENST00000421941 531 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AC006366.1-201ENST00000422002 759 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AL034379.1-201ENST00000423216 253 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AC099677.3-201ENST00000427081 395 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 NANOGP4-201ENST00000427230 913 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 DEFA9P-201ENST00000433042 285 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AL731534.1-201ENST00000434711 269 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AL353572.1-201ENST00000442490 417 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AL589880.1-201ENST00000448271 287 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 STRADBP1-201ENST00000478954 1281 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AC119751.1-201ENST00000513357 765 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 HMGB1P46-201ENST00000520062 610 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
USP39Q53GS9 AC005000.1-201ENST00000536192 288 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.9□□□□□ -1.46
USP39Q53GS9 C14orf2-211ENST00000557040 472 ntAPPRIS P1 TSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.9□□□□□ -1.46
USP39Q53GS9 AC005034.4-201ENST00000603612 899 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AC015849.2-201ENST00000605738 409 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 AC004948.1-201ENST00000609858 672 ntBASIC5.9□□□□□ -1.46
USP39Q53GS9 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.9□□□□□ -1.46
USP39Q53GS9 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
USP39Q53GS9 AL161912.4-201ENST00000623889 2468 ntBASIC5.9□□□□□ -1.47
USP39Q53GS9 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
USP39Q53GS9 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
USP39Q53GS9 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
USP39Q53GS9 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.47
USP39Q53GS9 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
USP39Q53GS9 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
USP39Q53GS9 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
USP39Q53GS9 C4BPAP1-201ENST00000415474 1893 ntBASIC5.9□□□□□ -1.47
USP39Q53GS9 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 AL590763.1-201ENST00000398297 1545 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
USP39Q53GS9 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.89□□□□□ -1.47
USP39Q53GS9 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
USP39Q53GS9 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
USP39Q53GS9 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC097063.1-201ENST00000426714 1797 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RNA5SP514-201ENST00000363717 111 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 Y_RNA.559-201ENST00000384686 107 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RNU6-1320P-201ENST00000390838 107 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RNU6-1269P-201ENST00000391139 107 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 AL133264.1-201ENST00000407157 562 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 AL356968.2-201ENST00000412769 1257 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 TEX41-202ENST00000414256 604 ntTSL 5 BASIC5.89□□□□□ -1.47
USP39Q53GS9 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AL133325.1-201ENST00000421090 382 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 AC011233.1-201ENST00000422812 283 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 NPM1P26-201ENST00000426339 738 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AL365220.1-201ENST00000432923 399 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 GTF2IP3-201ENST00000433887 494 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.89□□□□□ -1.47
USP39Q53GS9 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.89□□□□□ -1.47
USP39Q53GS9 AC010890.1-201ENST00000454699 469 ntTSL 4 BASIC5.89□□□□□ -1.47
USP39Q53GS9 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC5.89□□□□□ -1.47
USP39Q53GS9 RPL7P45-201ENST00000455851 743 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 NDUFA12P1-201ENST00000455914 406 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.89□□□□□ -1.47
USP39Q53GS9 RNU6-599P-201ENST00000459383 107 ntBASIC5.89□□□□□ -1.47
USP39Q53GS9 RNU6-1193P-201ENST00000459461 107 ntBASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms