Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC092809.1-201ENST00000441469 474 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 TPTE2P6-202ENST00000445572 1007 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 RPL7P1-201ENST00000468161 747 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 RPL7P9-201ENST00000468715 747 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AL161747.1-201ENST00000480068 358 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC092045.1-201ENST00000495716 1231 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 MTCO3P7-201ENST00000510008 774 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 TCP11X3P-202ENST00000514289 1254 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 RNU6-678P-201ENST00000516832 109 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 IGKV2-19-201ENST00000518132 283 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 CDC42P3-201ENST00000518493 633 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 NAP1L1P1-201ENST00000524793 1063 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 RFPL1S-203ENST00000539579 330 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 OR4H6P-201ENST00000563771 921 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 ACTR3BP3-201ENST00000565577 979 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC131235.4-201ENST00000609288 620 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC092266.1-201ENST00000610958 165 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC009163.6-201ENST00000612367 342 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AL139418.1-201ENST00000613613 177 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC116618.1-201ENST00000634617 774 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 PSD3-202ENST00000327040 11689 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 RBPJP2-201ENST00000618187 1444 ntBASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
TRIM39Q9HCM9 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC024587.1-201ENST00000505925 2157 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 SNORD116-4-201ENST00000384733 96 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL138880.1-201ENST00000405824 642 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL450992.3-201ENST00000413192 568 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC129850.1-201ENST00000436203 508 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 GTF3AP5-201ENST00000442645 697 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 TRIM60P16-201ENST00000444048 694 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 Z83838.1-202ENST00000456225 839 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 MTCYBP37-201ENST00000510642 1133 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 MTATP6P1-201ENST00000514057 681 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 PRMT5P1-201ENST00000514351 598 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 RNU6-1225P-201ENST00000516336 65 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 IGKV3D-25-201ENST00000519599 235 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 COX6B1P6-201ENST00000522347 255 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AP001804.1-201ENST00000526868 919 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 HMGN2P47-201ENST00000559378 272 ntBASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC6.06□□□□□ -1.44
TRIM39Q9HCM9 AL499605.1-201ENST00000604628 403 ntBASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms