Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 HSPA8P15-201ENST00000401676 786 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 AL391361.1-201ENST00000405580 489 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 U3.32-201ENST00000408116 212 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 CTSL3P-202ENST00000412179 788 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 BMS1P17-202ENST00000416720 316 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 MTND4LP13-201ENST00000425022 298 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC012075.1-201ENST00000436549 580 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AL672138.1-201ENST00000450604 1015 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 CALM1P2-201ENST00000452941 448 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 TPT1P1-201ENST00000458495 518 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AL133445.1-201ENST00000467051 452 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC100832.1-201ENST00000471945 383 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 NPM1P17-201ENST00000479221 602 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC069304.1-201ENST00000491593 704 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 CDH12P2-201ENST00000504393 298 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 NAMPTP2-201ENST00000505629 1115 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 MTHFD2P4-201ENST00000515074 1025 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 BX510359.5-201ENST00000515651 304 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC109635.6-201ENST00000525487 1113 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC087888.1-201ENST00000550884 1254 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AL512310.9-201ENST00000553311 948 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 RN7SL708P-201ENST00000580952 299 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.51□□□□□ -1.69
NKX3-1Q99801 BNIP3P35-201ENST00000604530 490 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 AL139022.2-201ENST00000606934 443 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 MIR8084-201ENST00000614105 89 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 AC005840.5-201ENST00000619166 599 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 LINC01963-201ENST00000562038 3148 ntBASIC4.51□□□□□ -1.69
NKX3-1Q99801 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
NKX3-1Q99801 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 MAPK10-349ENST00000641767 3661 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 RN7SKP160-201ENST00000363804 340 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 RNU1-77P-201ENST00000390868 162 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AL035405.1-201ENST00000400795 710 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 TAF9BP2-201ENST00000400856 499 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AL035079.1-201ENST00000405210 287 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 UQCRFS1P3-201ENST00000407697 385 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 Z93019.1-201ENST00000416450 973 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 RPS26P13-201ENST00000419030 330 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 NLGN1-AS1-201ENST00000423873 815 ntTSL 3 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 AL512637.2-201ENST00000431287 1256 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 RPL12P17-201ENST00000432393 498 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 RPL7AP61-201ENST00000443410 636 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AC105399.1-202ENST00000447303 205 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AL157827.1-201ENST00000447622 132 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 RPL23AP23-201ENST00000452590 471 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms