Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
FOXA1P55317 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
FOXA1P55317 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
FOXA1P55317 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 MAPK10-303ENST00000641324 3959 ntBASIC4.47□□□□□ -1.69
FOXA1P55317 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.47□□□□□ -1.69
FOXA1P55317 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
FOXA1P55317 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
FOXA1P55317 RN7SKP213-201ENST00000410746 298 ntBASIC4.47□□□□□ -1.69
FOXA1P55317 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.47□□□□□ -1.69
FOXA1P55317 ARL4AP3-201ENST00000441452 574 ntBASIC4.47□□□□□ -1.69
FOXA1P55317 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.47□□□□□ -1.69
FOXA1P55317 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.47□□□□□ -1.69
FOXA1P55317 RPL36AP41-201ENST00000493820 306 ntBASIC4.47□□□□□ -1.69
FOXA1P55317 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.47□□□□□ -1.69
FOXA1P55317 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.47□□□□□ -1.69
FOXA1P55317 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.47□□□□□ -1.69
FOXA1P55317 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.47□□□□□ -1.69
FOXA1P55317 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.47□□□□□ -1.69
FOXA1P55317 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC4.47□□□□□ -1.69
FOXA1P55317 AC027455.1-201ENST00000574104 594 ntBASIC4.47□□□□□ -1.69
FOXA1P55317 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.47□□□□□ -1.69
FOXA1P55317 AL022322.2-201ENST00000624072 20397 ntBASIC4.47□□□□□ -1.69
FOXA1P55317 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
FOXA1P55317 DDX18P4-201ENST00000511690 1966 ntBASIC4.47□□□□□ -1.69
FOXA1P55317 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.47□□□□□ -1.69
FOXA1P55317 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
FOXA1P55317 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.47□□□□□ -1.69
FOXA1P55317 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.47□□□□□ -1.69
FOXA1P55317 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
FOXA1P55317 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
FOXA1P55317 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
FOXA1P55317 AL513548.1-201ENST00000562904 1724 ntBASIC4.46□□□□□ -1.69
FOXA1P55317 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
FOXA1P55317 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.46□□□□□ -1.69
FOXA1P55317 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
FOXA1P55317 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.46□□□□□ -1.7
FOXA1P55317 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
FOXA1P55317 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
FOXA1P55317 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
FOXA1P55317 RNA5SP507-201ENST00000363603 121 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 SNORA51.8-201ENST00000384234 132 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 MIR1178-201ENST00000408396 91 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 RN7SKP278-201ENST00000410504 342 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 AC007559.1-201ENST00000428736 355 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 BRWD1P3-201ENST00000428816 390 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 FTLP19-201ENST00000433300 394 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 AL935212.3-201ENST00000450729 284 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC4.46□□□□□ -1.7
FOXA1P55317 ARL4AP1-201ENST00000503220 705 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.46□□□□□ -1.7
FOXA1P55317 RN7SL652P-201ENST00000577769 300 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 AC233702.9-201ENST00000581528 203 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.46□□□□□ -1.7
FOXA1P55317 SLC25A36P1-201ENST00000590111 465 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 AC013244.1-201ENST00000604279 193 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 AL391358.1-201ENST00000605342 190 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.46□□□□□ -1.7
FOXA1P55317 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.46□□□□□ -1.7
FOXA1P55317 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.46□□□□□ -1.7
FOXA1P55317 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
FOXA1P55317 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
FOXA1P55317 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC4.46□□□□□ -1.7
FOXA1P55317 AC092435.4-201ENST00000623012 4159 ntBASIC4.46□□□□□ -1.7
FOXA1P55317 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
FOXA1P55317 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
FOXA1P55317 RNA5SP372-201ENST00000390836 115 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC009237.10-201ENST00000414112 510 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC140479.3-201ENST00000418944 1126 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC4.45□□□□□ -1.7
FOXA1P55317 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.45□□□□□ -1.7
FOXA1P55317 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
FOXA1P55317 NRBF2P3-201ENST00000432731 865 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC4.45□□□□□ -1.7
FOXA1P55317 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC4.45□□□□□ -1.7
FOXA1P55317 SUMO2P1-206ENST00000445436 284 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 H2AFZP5-201ENST00000446960 382 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 RBMY2TP-201ENST00000451162 947 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.45□□□□□ -1.7
FOXA1P55317 ISCUP1-201ENST00000454451 448 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 RPL7AP6-201ENST00000477943 801 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 OR11I1P-201ENST00000486033 954 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 RPS26P24-201ENST00000497656 331 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC008638.1-201ENST00000506035 866 ntBASIC4.45□□□□□ -1.7
FOXA1P55317 AC098799.3-201ENST00000506095 438 ntBASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms