Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 AC073912.3-201ENST00000624414 853 ntBASIC20.65■□□□□ 0.9
CDH9Q9ULB4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.65■□□□□ 0.9
CDH9Q9ULB4 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDH9Q9ULB4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
CDH9Q9ULB4 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDH9Q9ULB4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
CDH9Q9ULB4 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDH9Q9ULB4 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDH9Q9ULB4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.64■□□□□ 0.9
CDH9Q9ULB4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDH9Q9ULB4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 FSCN1P1-201ENST00000568912 1481 ntBASIC20.64■□□□□ 0.89
CDH9Q9ULB4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH9Q9ULB4 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 RBM17P1-201ENST00000453646 1190 ntBASIC20.63■□□□□ 0.89
CDH9Q9ULB4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 MIR6786-201ENST00000616843 113 ntBASIC20.63■□□□□ 0.89
CDH9Q9ULB4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH9Q9ULB4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 UNC93B2-201ENST00000285383 730 ntBASIC20.62■□□□□ 0.89
CDH9Q9ULB4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 MESTP1-201ENST00000404287 994 ntBASIC20.62■□□□□ 0.89
CDH9Q9ULB4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH9Q9ULB4 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH9Q9ULB4 B3GAT3P1-201ENST00000471720 806 ntBASIC20.61■□□□□ 0.89
CDH9Q9ULB4 AC011506.1-201ENST00000474329 610 ntBASIC20.61■□□□□ 0.89
CDH9Q9ULB4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms