Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS28Q9UK41 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS28Q9UK41 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VPS28Q9UK41 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS28Q9UK41 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VPS28Q9UK41 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
VPS28Q9UK41 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VPS28Q9UK41 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 TUBB8P6-201ENST00000436895 1288 ntBASIC20.07■□□□□ 0.8
VPS28Q9UK41 SNORA78-201ENST00000459373 127 ntBASIC20.07■□□□□ 0.8
VPS28Q9UK41 AP002982.1-201ENST00000492365 877 ntBASIC20.07■□□□□ 0.8
VPS28Q9UK41 AF186192.3-201ENST00000583427 947 ntBASIC20.07■□□□□ 0.8
VPS28Q9UK41 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS28Q9UK41 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS28Q9UK41 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
VPS28Q9UK41 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS28Q9UK41 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS28Q9UK41 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS28Q9UK41 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS28Q9UK41 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS28Q9UK41 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS28Q9UK41 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS28Q9UK41 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS28Q9UK41 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS28Q9UK41 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS28Q9UK41 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS28Q9UK41 KRT18P16-201ENST00000510337 1294 ntBASIC20.06■□□□□ 0.8
VPS28Q9UK41 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
VPS28Q9UK41 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS28Q9UK41 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
VPS28Q9UK41 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 MIR4497-201ENST00000583208 89 ntBASIC20.05■□□□□ 0.8
VPS28Q9UK41 RPS15-203ENST00000586096 570 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 TCF3P1-201ENST00000423021 1937 ntBASIC20.05■□□□□ 0.8
VPS28Q9UK41 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS28Q9UK41 TMEM179-206ENST00000616017 1645 ntBASIC20.05■□□□□ 0.8
VPS28Q9UK41 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS28Q9UK41 AC009237.14-201ENST00000609975 1594 ntBASIC20.04■□□□□ 0.8
VPS28Q9UK41 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 AC113410.3-201ENST00000623366 203 ntBASIC20.04■□□□□ 0.8
VPS28Q9UK41 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS28Q9UK41 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
VPS28Q9UK41 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
VPS28Q9UK41 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS28Q9UK41 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms