Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FAM86EP-206ENST00000510506 987 ntBASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 AC093458.2-201ENST00000623150 629 ntBASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.35■□□□□ 0.85
LIMD1Q9UGP4 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 AC116351.2-201ENST00000606540 1585 ntBASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 AC026396.1-201ENST00000419388 421 ntBASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 AL121603.2-201ENST00000557373 2117 ntBASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMD1Q9UGP4 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 AC004951.3-201ENST00000418645 1148 ntBASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 AC007663.1-201ENST00000438948 1240 ntBASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 AC141257.4-201ENST00000634557 245 ntBASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 AC136944.6-201ENST00000634818 245 ntBASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMD1Q9UGP4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMD1Q9UGP4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMD1Q9UGP4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMD1Q9UGP4 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
LIMD1Q9UGP4 Z98882.1-201ENST00000622160 2253 ntBASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 SLC25A1P2-201ENST00000430693 912 ntBASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 DUSP5P1-201ENST00000441325 1139 ntBASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 AL121956.5-201ENST00000625261 221 ntBASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 IER3-202ENST00000376377 1350 ntBASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMD1Q9UGP4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMD1Q9UGP4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms