Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 B3GAT3P1-201ENST00000471720 806 ntBASIC21.03■□□□□ 0.96
CNTN3Q9P232 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CNTN3Q9P232 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CNTN3Q9P232 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 MIR6786-201ENST00000616843 113 ntBASIC21.03■□□□□ 0.96
CNTN3Q9P232 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
CNTN3Q9P232 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CNTN3Q9P232 PKD1P6-201ENST00000343738 4769 ntBASIC21.02■□□□□ 0.96
CNTN3Q9P232 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CNTN3Q9P232 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CNTN3Q9P232 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.02■□□□□ 0.96
CNTN3Q9P232 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CNTN3Q9P232 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CNTN3Q9P232 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.02■□□□□ 0.96
CNTN3Q9P232 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CNTN3Q9P232 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.02■□□□□ 0.96
CNTN3Q9P232 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC21.02■□□□□ 0.96
CNTN3Q9P232 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CNTN3Q9P232 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.02■□□□□ 0.96
CNTN3Q9P232 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CNTN3Q9P232 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CNTN3Q9P232 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CNTN3Q9P232 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CNTN3Q9P232 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.02■□□□□ 0.95
CNTN3Q9P232 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CNTN3Q9P232 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CNTN3Q9P232 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CNTN3Q9P232 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC21.02■□□□□ 0.95
CNTN3Q9P232 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CNTN3Q9P232 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.01■□□□□ 0.95
CNTN3Q9P232 AC211429.1-201ENST00000415277 523 ntBASIC21.01■□□□□ 0.95
CNTN3Q9P232 AC011506.1-201ENST00000474329 610 ntBASIC21.01■□□□□ 0.95
CNTN3Q9P232 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 AP000525.1-201ENST00000608286 694 ntBASIC21.01■□□□□ 0.95
CNTN3Q9P232 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.01■□□□□ 0.95
CNTN3Q9P232 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CNTN3Q9P232 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CNTN3Q9P232 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21■□□□□ 0.95
CNTN3Q9P232 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 MMP23A-201ENST00000234610 1017 ntBASIC21■□□□□ 0.95
CNTN3Q9P232 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CNTN3Q9P232 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CNTN3Q9P232 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
CNTN3Q9P232 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21■□□□□ 0.95
CNTN3Q9P232 Z85996.1-201ENST00000494644 937 ntBASIC21■□□□□ 0.95
CNTN3Q9P232 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21■□□□□ 0.95
CNTN3Q9P232 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21■□□□□ 0.95
CNTN3Q9P232 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 RCC2P6-201ENST00000526625 1557 ntBASIC21■□□□□ 0.95
CNTN3Q9P232 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21■□□□□ 0.95
CNTN3Q9P232 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CNTN3Q9P232 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CNTN3Q9P232 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 DGCR10-201ENST00000609839 495 ntBASIC20.99■□□□□ 0.95
CNTN3Q9P232 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.99■□□□□ 0.95
CNTN3Q9P232 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CNTN3Q9P232 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CNTN3Q9P232 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.98■□□□□ 0.95
CNTN3Q9P232 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms