Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LINC01311-201ENST00000565162 1445 ntBASIC19.37■□□□□ 0.69
VPS13AQ96RL7 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 HBZP1-201ENST00000354915 429 ntBASIC19.36■□□□□ 0.69
VPS13AQ96RL7 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 AC112907.2-201ENST00000448639 330 ntBASIC19.36■□□□□ 0.69
VPS13AQ96RL7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS13AQ96RL7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 ECEL1P1-201ENST00000373592 1742 ntBASIC19.35■□□□□ 0.69
VPS13AQ96RL7 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 AL160237.2-201ENST00000556165 472 ntBASIC19.35■□□□□ 0.69
VPS13AQ96RL7 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.35■□□□□ 0.69
VPS13AQ96RL7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.35■□□□□ 0.69
VPS13AQ96RL7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 CALM3-211ENST00000598871 561 ntTSL 4 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 AL645929.1-201ENST00000420084 975 ntBASIC19.34■□□□□ 0.69
VPS13AQ96RL7 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 AC092597.1-201ENST00000487352 616 ntBASIC19.34■□□□□ 0.69
VPS13AQ96RL7 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
VPS13AQ96RL7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS13AQ96RL7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.33■□□□□ 0.69
VPS13AQ96RL7 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS13AQ96RL7 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
VPS13AQ96RL7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS13AQ96RL7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
VPS13AQ96RL7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS13AQ96RL7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS13AQ96RL7 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 BX119927.1-201ENST00000636596 1552 ntBASIC19.33■□□□□ 0.68
VPS13AQ96RL7 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS13AQ96RL7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 MIR574-201ENST00000385209 96 ntBASIC19.32■□□□□ 0.68
VPS13AQ96RL7 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 AC016734.2-201ENST00000624325 1377 ntBASIC19.32■□□□□ 0.68
VPS13AQ96RL7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 FBXW4P1-201ENST00000426721 2239 ntBASIC19.32■□□□□ 0.68
VPS13AQ96RL7 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 AL355385.1-201ENST00000606123 409 ntBASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms