Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VPS35Q96QK1 AP006294.2-201ENST00000641667 209 ntBASIC19.38■□□□□ 0.69
VPS35Q96QK1 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS35Q96QK1 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 AL135905.2-201ENST00000584934 1404 ntBASIC19.37■□□□□ 0.69
VPS35Q96QK1 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 AL353807.1-201ENST00000427475 662 ntBASIC19.37■□□□□ 0.69
VPS35Q96QK1 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS35Q96QK1 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS35Q96QK1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 HTR7P1-201ENST00000538670 1336 ntBASIC19.36■□□□□ 0.69
VPS35Q96QK1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 AL353708.3-201ENST00000610272 989 ntBASIC19.36■□□□□ 0.69
VPS35Q96QK1 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS35Q96QK1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS35Q96QK1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 AC012618.2-201ENST00000428058 849 ntBASIC19.35■□□□□ 0.69
VPS35Q96QK1 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VPS35Q96QK1 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS35Q96QK1 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms