Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 Z99916.2-201ENST00000604037 246 ntBASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
PTCHD1Q96NR3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD1Q96NR3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.39■□□□□ 0.54
PTCHD1Q96NR3 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD1Q96NR3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
PTCHD1Q96NR3 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 RPS2P55-201ENST00000397318 883 ntBASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 AC107956.1-201ENST00000494359 873 ntBASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 KRT18P16-201ENST00000510337 1294 ntBASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PTCHD1Q96NR3 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 AP001412.1-201ENST00000608405 714 ntBASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PTCHD1Q96NR3 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 AC012618.2-201ENST00000428058 849 ntBASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.37■□□□□ 0.53
PTCHD1Q96NR3 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms