Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
VMP1Q96GC9 PTBP1P-201ENST00000554374 1601 ntBASIC18.65■□□□□ 0.58
VMP1Q96GC9 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.65■□□□□ 0.58
VMP1Q96GC9 POM121L13P-201ENST00000422362 380 ntBASIC18.65■□□□□ 0.58
VMP1Q96GC9 AC128676.1-201ENST00000454392 318 ntBASIC18.65■□□□□ 0.58
VMP1Q96GC9 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.65■□□□□ 0.58
VMP1Q96GC9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.65■□□□□ 0.58
VMP1Q96GC9 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.65■□□□□ 0.58
VMP1Q96GC9 AL031963.3-201ENST00000606441 850 ntBASIC18.65■□□□□ 0.58
VMP1Q96GC9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 DPP3P2-201ENST00000416030 1696 ntBASIC18.65■□□□□ 0.58
VMP1Q96GC9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.65■□□□□ 0.58
VMP1Q96GC9 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 KRT8P20-201ENST00000423953 1409 ntBASIC18.65■□□□□ 0.58
VMP1Q96GC9 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VMP1Q96GC9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.65■□□□□ 0.58
VMP1Q96GC9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VMP1Q96GC9 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
VMP1Q96GC9 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
VMP1Q96GC9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
VMP1Q96GC9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
VMP1Q96GC9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
VMP1Q96GC9 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VMP1Q96GC9 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.64■□□□□ 0.57
VMP1Q96GC9 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VMP1Q96GC9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.64■□□□□ 0.57
VMP1Q96GC9 AC073648.6-201ENST00000641589 218 ntBASIC18.64■□□□□ 0.57
VMP1Q96GC9 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VMP1Q96GC9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.64■□□□□ 0.57
VMP1Q96GC9 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.64■□□□□ 0.57
VMP1Q96GC9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.64■□□□□ 0.57
VMP1Q96GC9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VMP1Q96GC9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VMP1Q96GC9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.64■□□□□ 0.57
VMP1Q96GC9 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.64■□□□□ 0.57
VMP1Q96GC9 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VMP1Q96GC9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 AC120498.8-201ENST00000614275 531 ntBASIC18.63■□□□□ 0.57
VMP1Q96GC9 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.63■□□□□ 0.57
VMP1Q96GC9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VMP1Q96GC9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
VMP1Q96GC9 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VMP1Q96GC9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms