Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HDDC3Q8N4P3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HDDC3Q8N4P3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HDDC3Q8N4P3 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
HDDC3Q8N4P3 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HDDC3Q8N4P3 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.58■□□□□ 0.73
HDDC3Q8N4P3 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HDDC3Q8N4P3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
HDDC3Q8N4P3 FEM1AP1-201ENST00000431297 1995 ntBASIC19.58■□□□□ 0.73
HDDC3Q8N4P3 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HDDC3Q8N4P3 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 DGCR10-201ENST00000609839 495 ntBASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.57■□□□□ 0.72
HDDC3Q8N4P3 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 AL391422.3-201ENST00000603791 2761 ntBASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 CRYGFP-201ENST00000418459 633 ntBASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 AC104076.2-201ENST00000448912 469 ntBASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 AC097488.1-201ENST00000507834 756 ntBASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 AL691432.2-201ENST00000607222 2038 ntBASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
HDDC3Q8N4P3 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 RCC2P6-201ENST00000526625 1557 ntBASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 C2orf69P3-201ENST00000565542 1120 ntBASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 AC011298.2-201ENST00000617989 482 ntBASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 AC130371.2-201ENST00000619443 611 ntBASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 GABARAPL3-202ENST00000624044 1851 ntBASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.55■□□□□ 0.72
HDDC3Q8N4P3 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HDDC3Q8N4P3 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms