Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3Q7Z494 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3Q7Z494 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP3Q7Z494 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 AC111152.3-201ENST00000569699 673 ntBASIC26.56■■□□□ 1.84
NPHP3Q7Z494 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 KRT8P41-201ENST00000533985 1514 ntBASIC26.56■■□□□ 1.84
NPHP3Q7Z494 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP3Q7Z494 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 SKP2-204ENST00000508514 821 ntTSL 3 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP3Q7Z494 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 AP000347.1-202ENST00000435868 847 ntBASIC26.54■■□□□ 1.84
NPHP3Q7Z494 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC26.54■■□□□ 1.84
NPHP3Q7Z494 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 AC004870.1-201ENST00000315132 882 ntBASIC26.53■■□□□ 1.84
NPHP3Q7Z494 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 KRT17P6-201ENST00000453795 1220 ntBASIC26.53■■□□□ 1.84
NPHP3Q7Z494 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 CR769767.2-201ENST00000622735 460 ntBASIC26.53■■□□□ 1.84
NPHP3Q7Z494 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC26.53■■□□□ 1.84
NPHP3Q7Z494 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP3Q7Z494 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP3Q7Z494 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP3Q7Z494 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP3Q7Z494 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP3Q7Z494 HBZP1-201ENST00000354915 429 ntBASIC26.51■■□□□ 1.83
NPHP3Q7Z494 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP3Q7Z494 FAAHP1-202ENST00000446499 1238 ntBASIC26.51■■□□□ 1.83
NPHP3Q7Z494 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC26.51■■□□□ 1.83
NPHP3Q7Z494 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC26.51■■□□□ 1.83
NPHP3Q7Z494 AC092329.2-201ENST00000598402 547 ntBASIC26.51■■□□□ 1.83
NPHP3Q7Z494 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP3Q7Z494 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms