Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.83■□□□□ 0.77
USP39Q53GS9 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
USP39Q53GS9 AL445675.2-201ENST00000620291 557 ntBASIC19.83■□□□□ 0.77
USP39Q53GS9 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
USP39Q53GS9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USP39Q53GS9 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.82■□□□□ 0.76
USP39Q53GS9 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.82■□□□□ 0.76
USP39Q53GS9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.82■□□□□ 0.76
USP39Q53GS9 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
USP39Q53GS9 C1QL1P1-201ENST00000568105 661 ntBASIC19.82■□□□□ 0.76
USP39Q53GS9 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
USP39Q53GS9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.82■□□□□ 0.76
USP39Q53GS9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
USP39Q53GS9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USP39Q53GS9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.81■□□□□ 0.76
USP39Q53GS9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
USP39Q53GS9 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.81■□□□□ 0.76
USP39Q53GS9 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.81■□□□□ 0.76
USP39Q53GS9 AC128688.1-201ENST00000487626 519 ntBASIC19.81■□□□□ 0.76
USP39Q53GS9 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
USP39Q53GS9 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.81■□□□□ 0.76
USP39Q53GS9 AC010203.1-204ENST00000548782 407 ntBASIC19.81■□□□□ 0.76
USP39Q53GS9 AP005242.2-201ENST00000580065 1175 ntBASIC19.81■□□□□ 0.76
USP39Q53GS9 DGCR10-201ENST00000609839 495 ntBASIC19.81■□□□□ 0.76
USP39Q53GS9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
USP39Q53GS9 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
USP39Q53GS9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USP39Q53GS9 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
USP39Q53GS9 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
USP39Q53GS9 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.8■□□□□ 0.76
USP39Q53GS9 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.8■□□□□ 0.76
USP39Q53GS9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.8■□□□□ 0.76
USP39Q53GS9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.8■□□□□ 0.76
USP39Q53GS9 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.8■□□□□ 0.76
USP39Q53GS9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
USP39Q53GS9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
USP39Q53GS9 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
USP39Q53GS9 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
USP39Q53GS9 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
USP39Q53GS9 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.79■□□□□ 0.76
USP39Q53GS9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
USP39Q53GS9 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 TSPY14P-201ENST00000303979 915 ntBASIC19.79■□□□□ 0.76
USP39Q53GS9 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
USP39Q53GS9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
USP39Q53GS9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms