Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
USP41Q3LFD5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USP41Q3LFD5 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.77■□□□□ 0.92
USP41Q3LFD5 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.76■□□□□ 0.91
USP41Q3LFD5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 ATP5G1P1-201ENST00000448724 379 ntBASIC20.76■□□□□ 0.91
USP41Q3LFD5 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 AC010203.1-204ENST00000548782 407 ntBASIC20.76■□□□□ 0.91
USP41Q3LFD5 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.76■□□□□ 0.91
USP41Q3LFD5 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USP41Q3LFD5 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.75■□□□□ 0.91
USP41Q3LFD5 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USP41Q3LFD5 AC096733.2-201ENST00000609937 1394 ntBASIC20.74■□□□□ 0.91
USP41Q3LFD5 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP41Q3LFD5 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP41Q3LFD5 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP41Q3LFD5 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP41Q3LFD5 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP41Q3LFD5 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.74■□□□□ 0.91
USP41Q3LFD5 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.74■□□□□ 0.91
USP41Q3LFD5 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.74■□□□□ 0.91
USP41Q3LFD5 MFAP1P1-201ENST00000442257 1255 ntBASIC20.74■□□□□ 0.91
USP41Q3LFD5 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.74■□□□□ 0.91
USP41Q3LFD5 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.74■□□□□ 0.91
USP41Q3LFD5 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.74■□□□□ 0.91
USP41Q3LFD5 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
USP41Q3LFD5 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USP41Q3LFD5 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USP41Q3LFD5 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 AC104076.2-201ENST00000448912 469 ntBASIC20.73■□□□□ 0.91
USP41Q3LFD5 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 AC091390.4-202ENST00000476426 537 ntBASIC20.73■□□□□ 0.91
USP41Q3LFD5 Z85996.1-201ENST00000494644 937 ntBASIC20.73■□□□□ 0.91
USP41Q3LFD5 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.73■□□□□ 0.91
USP41Q3LFD5 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.73■□□□□ 0.91
USP41Q3LFD5 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USP41Q3LFD5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.72■□□□□ 0.91
USP41Q3LFD5 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP41Q3LFD5 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
USP41Q3LFD5 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.72■□□□□ 0.91
USP41Q3LFD5 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms