Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC22.82■■□□□ 1.24
SHROOM1Q2M3G4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
SHROOM1Q2M3G4 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
SHROOM1Q2M3G4 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
SHROOM1Q2M3G4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 KRT8P41-201ENST00000533985 1514 ntBASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SHROOM1Q2M3G4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 GABARAPL3-202ENST00000624044 1851 ntBASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 LINC01006-201ENST00000333319 2292 ntBASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 LGALS8-AS1-201ENST00000487567 1457 ntBASIC22.79■■□□□ 1.24
SHROOM1Q2M3G4 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 AL160286.2-201ENST00000567150 934 ntBASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
SHROOM1Q2M3G4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SHROOM1Q2M3G4 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
SHROOM1Q2M3G4 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
SHROOM1Q2M3G4 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM1Q2M3G4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM1Q2M3G4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM1Q2M3G4 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SHROOM1Q2M3G4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms