Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.53■□□□□ 0.88
USP46P62068 AL445675.2-201ENST00000620291 557 ntBASIC20.53■□□□□ 0.88
USP46P62068 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.53■□□□□ 0.88
USP46P62068 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USP46P62068 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
USP46P62068 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.53■□□□□ 0.88
USP46P62068 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USP46P62068 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USP46P62068 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP46P62068 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.53■□□□□ 0.88
USP46P62068 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
USP46P62068 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP46P62068 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
USP46P62068 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP46P62068 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
USP46P62068 AC079598.2-202ENST00000546624 1451 ntBASIC20.52■□□□□ 0.88
USP46P62068 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP46P62068 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.52■□□□□ 0.88
USP46P62068 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
USP46P62068 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP46P62068 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP46P62068 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.52■□□□□ 0.88
USP46P62068 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
USP46P62068 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP46P62068 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP46P62068 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.52■□□□□ 0.87
USP46P62068 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USP46P62068 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
USP46P62068 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
USP46P62068 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.51■□□□□ 0.87
USP46P62068 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.51■□□□□ 0.87
USP46P62068 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 AC116562.2-201ENST00000507042 360 ntBASIC20.51■□□□□ 0.87
USP46P62068 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.51■□□□□ 0.87
USP46P62068 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.51■□□□□ 0.87
USP46P62068 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.51■□□□□ 0.87
USP46P62068 HLA-A-209ENST00000638375 975 ntBASIC20.51■□□□□ 0.87
USP46P62068 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.51■□□□□ 0.87
USP46P62068 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USP46P62068 TCF3P1-201ENST00000423021 1937 ntBASIC20.51■□□□□ 0.87
USP46P62068 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
USP46P62068 AC009237.14-201ENST00000609975 1594 ntBASIC20.51■□□□□ 0.87
USP46P62068 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.5■□□□□ 0.87
USP46P62068 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.5■□□□□ 0.87
USP46P62068 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
USP46P62068 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
USP46P62068 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
USP46P62068 MESTP1-201ENST00000404287 994 ntBASIC20.5■□□□□ 0.87
USP46P62068 AC004980.1-204ENST00000429707 299 ntBASIC20.5■□□□□ 0.87
USP46P62068 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.5■□□□□ 0.87
USP46P62068 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.5■□□□□ 0.87
USP46P62068 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
USP46P62068 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
USP46P62068 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.5■□□□□ 0.87
USP46P62068 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
USP46P62068 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.5■□□□□ 0.87
USP46P62068 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USP46P62068 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
USP46P62068 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
USP46P62068 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
USP46P62068 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.49■□□□□ 0.87
USP46P62068 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.49■□□□□ 0.87
USP46P62068 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.49■□□□□ 0.87
USP46P62068 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.49■□□□□ 0.87
USP46P62068 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 AP000525.1-201ENST00000608286 694 ntBASIC20.49■□□□□ 0.87
USP46P62068 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USP46P62068 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms