Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.48■□□□□ 0.71
CXCL12P48061 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.48■□□□□ 0.71
CXCL12P48061 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.48■□□□□ 0.71
CXCL12P48061 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.48■□□□□ 0.71
CXCL12P48061 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CXCL12P48061 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.48■□□□□ 0.71
CXCL12P48061 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL12P48061 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CXCL12P48061 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CXCL12P48061 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.47■□□□□ 0.71
CXCL12P48061 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.47■□□□□ 0.71
CXCL12P48061 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC19.47■□□□□ 0.71
CXCL12P48061 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.47■□□□□ 0.71
CXCL12P48061 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.47■□□□□ 0.71
CXCL12P48061 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.47■□□□□ 0.71
CXCL12P48061 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.47■□□□□ 0.71
CXCL12P48061 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.47■□□□□ 0.71
CXCL12P48061 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.47■□□□□ 0.71
CXCL12P48061 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL12P48061 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CXCL12P48061 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CXCL12P48061 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL12P48061 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL12P48061 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL12P48061 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CXCL12P48061 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.46■□□□□ 0.71
CXCL12P48061 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.46■□□□□ 0.71
CXCL12P48061 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL12P48061 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL12P48061 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL12P48061 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.45■□□□□ 0.7
CXCL12P48061 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.45■□□□□ 0.7
CXCL12P48061 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
CXCL12P48061 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC19.45■□□□□ 0.7
CXCL12P48061 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CXCL12P48061 STARP1-201ENST00000397973 869 ntBASIC19.45■□□□□ 0.7
CXCL12P48061 ATP5G2P1-201ENST00000433580 426 ntBASIC19.45■□□□□ 0.7
CXCL12P48061 NEK4P2-201ENST00000580004 1012 ntBASIC19.45■□□□□ 0.7
CXCL12P48061 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
CXCL12P48061 AC083849.1-201ENST00000615227 514 ntBASIC19.45■□□□□ 0.7
CXCL12P48061 AC012313.10-201ENST00000623509 926 ntBASIC19.45■□□□□ 0.7
CXCL12P48061 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CXCL12P48061 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.45■□□□□ 0.7
CXCL12P48061 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.45■□□□□ 0.7
CXCL12P48061 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL12P48061 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.44■□□□□ 0.7
CXCL12P48061 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL12P48061 LINC01311-201ENST00000565162 1445 ntBASIC19.44■□□□□ 0.7
CXCL12P48061 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL12P48061 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL12P48061 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.44■□□□□ 0.7
CXCL12P48061 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.44■□□□□ 0.7
CXCL12P48061 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL12P48061 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL12P48061 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.44■□□□□ 0.7
CXCL12P48061 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL12P48061 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL12P48061 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.43■□□□□ 0.7
CXCL12P48061 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CXCL12P48061 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms