Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 CKBP1-201ENST00000565489 1086 ntBASIC19.65■□□□□ 0.74
TNFRSF4P43489 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TNFRSF4P43489 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
TNFRSF4P43489 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
TNFRSF4P43489 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.64■□□□□ 0.74
TNFRSF4P43489 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TNFRSF4P43489 FAM8A6P-201ENST00000407496 1135 ntBASIC19.64■□□□□ 0.73
TNFRSF4P43489 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.64■□□□□ 0.73
TNFRSF4P43489 COX11P1-201ENST00000489116 835 ntBASIC19.64■□□□□ 0.73
TNFRSF4P43489 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TNFRSF4P43489 AC139887.4-201ENST00000607877 719 ntBASIC19.64■□□□□ 0.73
TNFRSF4P43489 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
TNFRSF4P43489 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFRSF4P43489 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.64■□□□□ 0.73
TNFRSF4P43489 KRT8P41-201ENST00000533985 1514 ntBASIC19.64■□□□□ 0.73
TNFRSF4P43489 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFRSF4P43489 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.64■□□□□ 0.73
TNFRSF4P43489 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.64■□□□□ 0.73
TNFRSF4P43489 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFRSF4P43489 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
TNFRSF4P43489 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFRSF4P43489 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFRSF4P43489 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFRSF4P43489 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.63■□□□□ 0.73
TNFRSF4P43489 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.63■□□□□ 0.73
TNFRSF4P43489 AC141257.4-201ENST00000634557 245 ntBASIC19.63■□□□□ 0.73
TNFRSF4P43489 AC136944.6-201ENST00000634818 245 ntBASIC19.63■□□□□ 0.73
TNFRSF4P43489 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFRSF4P43489 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
TNFRSF4P43489 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
TNFRSF4P43489 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFRSF4P43489 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFRSF4P43489 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFRSF4P43489 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFRSF4P43489 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFRSF4P43489 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TNFRSF4P43489 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFRSF4P43489 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFRSF4P43489 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFRSF4P43489 TSPY5P-201ENST00000426936 936 ntBASIC19.62■□□□□ 0.73
TNFRSF4P43489 YBX1P2-201ENST00000489612 999 ntBASIC19.62■□□□□ 0.73
TNFRSF4P43489 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.62■□□□□ 0.73
TNFRSF4P43489 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC19.62■□□□□ 0.73
TNFRSF4P43489 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.62■□□□□ 0.73
TNFRSF4P43489 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.62■□□□□ 0.73
TNFRSF4P43489 AL031432.5-201ENST00000641059 760 ntBASIC19.62■□□□□ 0.73
TNFRSF4P43489 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TNFRSF4P43489 LINC01465-201ENST00000408887 1940 ntBASIC19.62■□□□□ 0.73
TNFRSF4P43489 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
TNFRSF4P43489 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
TNFRSF4P43489 AC073314.1-201ENST00000568729 2216 ntBASIC19.61■□□□□ 0.73
TNFRSF4P43489 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
TNFRSF4P43489 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
TNFRSF4P43489 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms