Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CDKL5O76039 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC22.69■■□□□ 1.22
CDKL5O76039 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.69■■□□□ 1.22
CDKL5O76039 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC22.69■■□□□ 1.22
CDKL5O76039 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.69■■□□□ 1.22
CDKL5O76039 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC22.69■■□□□ 1.22
CDKL5O76039 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC22.69■■□□□ 1.22
CDKL5O76039 MMAB-206ENST00000540016 945 ntTSL 3 BASIC22.69■■□□□ 1.22
CDKL5O76039 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC22.69■■□□□ 1.22
CDKL5O76039 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CDKL5O76039 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
CDKL5O76039 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
CDKL5O76039 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC22.68■■□□□ 1.22
CDKL5O76039 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC22.68■■□□□ 1.22
CDKL5O76039 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CDKL5O76039 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CDKL5O76039 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDKL5O76039 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDKL5O76039 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC22.68■■□□□ 1.22
CDKL5O76039 TUBB8P6-201ENST00000436895 1288 ntBASIC22.68■■□□□ 1.22
CDKL5O76039 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CDKL5O76039 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.68■■□□□ 1.22
CDKL5O76039 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.68■■□□□ 1.22
CDKL5O76039 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC22.68■■□□□ 1.22
CDKL5O76039 AC069544.1-201ENST00000609399 999 ntBASIC22.68■■□□□ 1.22
CDKL5O76039 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDKL5O76039 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDKL5O76039 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CDKL5O76039 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC22.68■■□□□ 1.22
CDKL5O76039 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.67■■□□□ 1.22
CDKL5O76039 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDKL5O76039 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDKL5O76039 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC22.67■■□□□ 1.22
CDKL5O76039 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
CDKL5O76039 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
CDKL5O76039 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDKL5O76039 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
CDKL5O76039 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.67■■□□□ 1.22
CDKL5O76039 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
CDKL5O76039 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
CDKL5O76039 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC22.67■■□□□ 1.22
CDKL5O76039 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC22.67■■□□□ 1.22
CDKL5O76039 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDKL5O76039 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC22.67■■□□□ 1.22
CDKL5O76039 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC22.67■■□□□ 1.22
CDKL5O76039 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CDKL5O76039 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
CDKL5O76039 Z82202.1-201ENST00000623446 1880 ntBASIC22.66■■□□□ 1.22
CDKL5O76039 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC22.66■■□□□ 1.22
CDKL5O76039 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDKL5O76039 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDKL5O76039 ESRRAP1-201ENST00000400596 1257 ntBASIC22.66■■□□□ 1.22
CDKL5O76039 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDKL5O76039 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC22.66■■□□□ 1.22
CDKL5O76039 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.66■■□□□ 1.22
CDKL5O76039 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDKL5O76039 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CDKL5O76039 AC007952.6-201ENST00000573168 2673 ntBASIC22.66■■□□□ 1.22
CDKL5O76039 AC003957.1-201ENST00000625108 2673 ntBASIC22.66■■□□□ 1.22
CDKL5O76039 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
CDKL5O76039 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC22.66■■□□□ 1.22
CDKL5O76039 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
CDKL5O76039 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDKL5O76039 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CDKL5O76039 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC22.66■■□□□ 1.22
CDKL5O76039 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.65■■□□□ 1.22
CDKL5O76039 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC22.65■■□□□ 1.22
CDKL5O76039 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
CDKL5O76039 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC22.65■■□□□ 1.22
CDKL5O76039 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC22.65■■□□□ 1.22
CDKL5O76039 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 RHOD-202ENST00000532559 538 ntTSL 3 BASIC22.65■■□□□ 1.22
CDKL5O76039 MTDHP1-201ENST00000605323 784 ntBASIC22.65■■□□□ 1.22
CDKL5O76039 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC22.65■■□□□ 1.22
CDKL5O76039 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.65■■□□□ 1.22
CDKL5O76039 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC22.65■■□□□ 1.22
CDKL5O76039 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms