Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
LDB3O75112 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 TUBB8P6-201ENST00000436895 1288 ntBASIC18.37■□□□□ 0.53
LDB3O75112 KRT18P16-201ENST00000510337 1294 ntBASIC18.37■□□□□ 0.53
LDB3O75112 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.37■□□□□ 0.53
LDB3O75112 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.37■□□□□ 0.53
LDB3O75112 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LDB3O75112 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LDB3O75112 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.37■□□□□ 0.53
LDB3O75112 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LDB3O75112 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LDB3O75112 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
LDB3O75112 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.36■□□□□ 0.53
LDB3O75112 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.36■□□□□ 0.53
LDB3O75112 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.36■□□□□ 0.53
LDB3O75112 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.36■□□□□ 0.53
LDB3O75112 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.36■□□□□ 0.53
LDB3O75112 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LDB3O75112 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LDB3O75112 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.36■□□□□ 0.53
LDB3O75112 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LDB3O75112 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LDB3O75112 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LDB3O75112 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB3O75112 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB3O75112 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB3O75112 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB3O75112 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LDB3O75112 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
LDB3O75112 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 KRT16P5-201ENST00000455284 522 ntBASIC18.35■□□□□ 0.53
LDB3O75112 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.35■□□□□ 0.53
LDB3O75112 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.35■□□□□ 0.53
LDB3O75112 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.35■□□□□ 0.53
LDB3O75112 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LDB3O75112 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LDB3O75112 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
LDB3O75112 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
LDB3O75112 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB3O75112 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LDB3O75112 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LDB3O75112 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LDB3O75112 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
LDB3O75112 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB3O75112 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB3O75112 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LDB3O75112 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB3O75112 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LDB3O75112 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.34■□□□□ 0.53
LDB3O75112 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.34■□□□□ 0.53
LDB3O75112 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LDB3O75112 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB3O75112 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB3O75112 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
LDB3O75112 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.33■□□□□ 0.53
LDB3O75112 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LDB3O75112 KRT8P8-201ENST00000434750 1448 ntBASIC18.33■□□□□ 0.53
LDB3O75112 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LDB3O75112 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms