Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.89■□□□□ 0.77
HOXC11O43248 ECEL1P2-202ENST00000465689 757 ntBASIC19.89■□□□□ 0.77
HOXC11O43248 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC11O43248 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HOXC11O43248 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.89■□□□□ 0.77
HOXC11O43248 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.89■□□□□ 0.77
HOXC11O43248 AL049597.2-201ENST00000565575 961 ntBASIC19.89■□□□□ 0.77
HOXC11O43248 AL445228.2-201ENST00000605589 952 ntBASIC19.89■□□□□ 0.77
HOXC11O43248 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HOXC11O43248 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC11O43248 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC11O43248 AL590326.2-201ENST00000625139 305 ntBASIC19.89■□□□□ 0.77
HOXC11O43248 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.89■□□□□ 0.77
HOXC11O43248 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HOXC11O43248 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXC11O43248 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
HOXC11O43248 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXC11O43248 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC11O43248 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC11O43248 AC010203.1-204ENST00000548782 407 ntBASIC19.88■□□□□ 0.77
HOXC11O43248 CFL2-205ENST00000555765 632 ntTSL 2 BASIC19.88■□□□□ 0.77
HOXC11O43248 RBM42-202ENST00000586618 771 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXC11O43248 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXC11O43248 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.88■□□□□ 0.77
HOXC11O43248 FAM87A-204ENST00000613235 858 ntBASIC19.88■□□□□ 0.77
HOXC11O43248 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXC11O43248 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
HOXC11O43248 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HOXC11O43248 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
HOXC11O43248 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.88■□□□□ 0.77
HOXC11O43248 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.87■□□□□ 0.77
HOXC11O43248 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.87■□□□□ 0.77
HOXC11O43248 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HOXC11O43248 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HOXC11O43248 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
HOXC11O43248 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.87■□□□□ 0.77
HOXC11O43248 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
HOXC11O43248 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.87■□□□□ 0.77
HOXC11O43248 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HOXC11O43248 KRT18P35-201ENST00000510488 1269 ntBASIC19.87■□□□□ 0.77
HOXC11O43248 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.87■□□□□ 0.77
HOXC11O43248 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.87■□□□□ 0.77
HOXC11O43248 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HOXC11O43248 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
HOXC11O43248 INGX-201ENST00000359239 846 ntBASIC19.86■□□□□ 0.77
HOXC11O43248 SLC25A1P2-201ENST00000430693 912 ntBASIC19.86■□□□□ 0.77
HOXC11O43248 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.86■□□□□ 0.77
HOXC11O43248 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC11O43248 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
HOXC11O43248 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
HOXC11O43248 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.86■□□□□ 0.77
HOXC11O43248 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.85■□□□□ 0.77
HOXC11O43248 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
HOXC11O43248 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.85■□□□□ 0.77
HOXC11O43248 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC19.85■□□□□ 0.77
HOXC11O43248 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.85■□□□□ 0.77
HOXC11O43248 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms