Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC188H7C350 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC188H7C350 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC188H7C350 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC188H7C350 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
CCDC188H7C350 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC188H7C350 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC188H7C350 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC188H7C350 AC116351.2-201ENST00000606540 1585 ntBASIC20.28■□□□□ 0.84
CCDC188H7C350 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC188H7C350 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC188H7C350 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC188H7C350 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC188H7C350 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC188H7C350 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
CCDC188H7C350 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC188H7C350 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC188H7C350 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC188H7C350 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC188H7C350 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC188H7C350 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC188H7C350 C2orf69P4-201ENST00000565394 541 ntBASIC20.27■□□□□ 0.84
CCDC188H7C350 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC188H7C350 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC188H7C350 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC188H7C350 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.27■□□□□ 0.83
CCDC188H7C350 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC188H7C350 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC188H7C350 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC188H7C350 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC188H7C350 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC188H7C350 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC188H7C350 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC188H7C350 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
CCDC188H7C350 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC188H7C350 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC188H7C350 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC188H7C350 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC188H7C350 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC188H7C350 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC188H7C350 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
CCDC188H7C350 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC188H7C350 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.26■□□□□ 0.83
CCDC188H7C350 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC188H7C350 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC188H7C350 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC188H7C350 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CCDC188H7C350 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC188H7C350 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CCDC188H7C350 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 AIRN-201ENST00000601203 4374 ntBASIC20.25■□□□□ 0.83
CCDC188H7C350 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 MIR638-201ENST00000385237 100 ntBASIC20.25■□□□□ 0.83
CCDC188H7C350 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC188H7C350 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC188H7C350 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.25■□□□□ 0.83
CCDC188H7C350 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 AC009113.1-201ENST00000570267 2443 ntBASIC20.25■□□□□ 0.83
CCDC188H7C350 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC188H7C350 AC093525.10-201ENST00000625130 1569 ntBASIC20.25■□□□□ 0.83
CCDC188H7C350 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.25■□□□□ 0.83
CCDC188H7C350 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC188H7C350 ZNF815P-204ENST00000434898 1737 ntBASIC20.24■□□□□ 0.83
CCDC188H7C350 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.24■□□□□ 0.83
CCDC188H7C350 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CCDC188H7C350 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms