Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 C1GALT1-201ENST00000223122 6078 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC009135.2-201ENST00000624136 1768 ntBASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 EPHA6-204ENST00000502694 1582 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 CCDC152-201ENST00000361970 3431 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
TRIM35Q9UPQ4 AC087280.2-201ENST00000637205 4822 ntTSL 5 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 ZHX3-218ENST00000560364 4283 ntTSL 5 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 TMEM200A-203ENST00000545622 2918 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 MFN1-205ENST00000471841 5224 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 LINC00501-201ENST00000425388 2046 ntTSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 ENSAP3-201ENST00000312710 333 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 GAPDHP24-201ENST00000328713 983 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 Y_RNA.180-201ENST00000363867 113 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 SNORD115.1-201ENST00000391109 76 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 RNA5SP231-201ENST00000410496 138 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AL662791.3-201ENST00000413771 776 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC009743.1-201ENST00000415774 610 ntTSL 5 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC018865.2-201ENST00000423631 129 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC006335.2-201ENST00000437993 330 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 TVP23CP1-201ENST00000450317 639 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 Y_RNA.653-201ENST00000459091 95 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 TOPORSLP1-201ENST00000467693 2102 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 RPL38P3-201ENST00000484463 213 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 RN7SL569P-201ENST00000494652 288 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AK3P4-201ENST00000504283 583 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC027801.3-201ENST00000515049 698 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 RNU2-53P-201ENST00000516257 147 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC011333.1-201ENST00000520587 436 ntTSL 3 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 SUB1P1-201ENST00000524415 382 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC103855.4-201ENST00000533158 265 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 OR7E161P-201ENST00000533722 967 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 APPL2-203ENST00000546731 684 ntTSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 MIR3159-201ENST00000584572 74 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 BNIP3P4-201ENST00000604946 565 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC245407.2-201ENST00000614199 451 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC012629.3-201ENST00000623397 328 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC087894.3-201ENST00000623682 349 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 CFAP65-201ENST00000295729 2259 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 ADGRB3-202ENST00000370598 6010 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 CTNND1-230ENST00000532245 5655 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 ENSA-201ENST00000271690 2818 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 AC006378.2-201ENST00000623178 2476 ntBASIC9.36□□□□□ -0.91
TRIM35Q9UPQ4 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 ZCCHC11-201ENST00000257177 5743 ntAPPRIS P4 TSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC011447.6-201ENST00000623510 2598 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC119674.1-204ENST00000641348 1343 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 KARSP2-201ENST00000415696 1639 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 MAPK6PS2-201ENST00000379571 2060 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC023886.2-201ENST00000321285 411 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 NFIB-202ENST00000380924 840 ntTSL 5 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RNU6-456P-201ENST00000384493 107 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RNA5SP35-201ENST00000391257 129 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AL583835.1-201ENST00000399570 407 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RPL10P10-201ENST00000403509 664 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RPL23AP47-201ENST00000408017 460 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RN7SKP137-201ENST00000411074 307 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 DNAJC19P7-201ENST00000428811 344 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 MTND5P15-201ENST00000434246 349 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC239800.1-201ENST00000442049 719 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 WBP1LP1-201ENST00000460451 896 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 MYL6P4-201ENST00000477911 453 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RN7SL797P-201ENST00000486314 297 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC108693.1-201ENST00000496068 432 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC113615.1-201ENST00000507424 4121 ntTSL 2 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RPL7L1P7-201ENST00000509986 724 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 PGAM4P2-201ENST00000512491 721 ntBASIC9.35□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms