Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC234781.3-201ENST00000452540 973 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 snoU13.20-201ENST00000459180 104 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 MTND3P3-201ENST00000505004 126 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC091868.1-201ENST00000508746 304 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 RNU6-943P-201ENST00000516960 98 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 BUD31P1-201ENST00000521828 359 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 MTND4LP25-201ENST00000570218 163 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 RN7SL753P-201ENST00000581238 290 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AC091905.4-201ENST00000623432 202 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 AL359922.3-201ENST00000624779 1670 ntBASIC5.14□□□□□ -1.59
SIX2Q9NPC8 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.14□□□□□ -1.59
SIX2Q9NPC8 NCLP2-201ENST00000416078 1462 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 SAMMSON-226ENST00000642089 1582 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 RNA5SP507-201ENST00000363603 121 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AL590762.2-201ENST00000395798 571 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC114755.2-201ENST00000413520 361 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 FAR1P1-201ENST00000427163 934 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 RPS27P18-201ENST00000431701 247 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 CYCSP11-201ENST00000436426 315 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 OTX2P1-201ENST00000450956 354 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 C1DP3-201ENST00000455013 423 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 CYCSP34-201ENST00000458172 304 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 RNA5SP103-201ENST00000459503 118 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 RN7SL177P-201ENST00000476596 299 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC105129.1-201ENST00000560250 297 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC122134.1-202ENST00000569111 1201 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC015912.2-201ENST00000571053 181 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC209154.1-201ENST00000582156 337 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 VN1R81P-201ENST00000602085 372 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC130352.1-201ENST00000602979 661 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 OR51C1P-201ENST00000608504 942 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 OR7M1P-201ENST00000608946 533 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC087385.3-201ENST00000620477 187 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 HSPA8P14-201ENST00000552265 1805 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 AL672167.1-203ENST00000641299 2975 ntBASIC5.13□□□□□ -1.59
SIX2Q9NPC8 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
SIX2Q9NPC8 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AL589994.1-201ENST00000404962 340 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AL589655.1-201ENST00000405398 482 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 RNU4-34P-201ENST00000410431 124 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 MTND4LP21-201ENST00000415303 295 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 FABP7P1-201ENST00000424004 391 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AJ239321.1-201ENST00000424255 564 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 MGAT2P2-201ENST00000427194 797 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 NPM1P25-201ENST00000429734 854 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AL392003.1-201ENST00000434394 243 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AL590762.3-201ENST00000436372 640 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 HGF-207ENST00000453018 721 ntTSL 3 BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 RPL7AP6-201ENST00000477943 801 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AC104971.1-201ENST00000495117 578 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 SCARNA22-201ENST00000503991 125 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AC073358.1-201ENST00000505671 684 ntBASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.12□□□□□ -1.59
SIX2Q9NPC8 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms