Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 U2.22-201ENST00000636441 106 ntBASIC7.13□□□□□ -1.27
USB1Q9BQ65 ATM-230ENST00000640388 578 ntTSL 5 BASIC7.13□□□□□ -1.27
USB1Q9BQ65 STRADA-246ENST00000640397 1045 ntTSL 5 BASIC7.13□□□□□ -1.27
USB1Q9BQ65 KLF8-206ENST00000640927 1150 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
USB1Q9BQ65 AC104581.5-201ENST00000624171 7141 ntBASIC7.13□□□□□ -1.27
USB1Q9BQ65 SERPINB8-203ENST00000397985 3477 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 AP002833.3-201ENST00000625075 2265 ntBASIC7.13□□□□□ -1.27
USB1Q9BQ65 TRAF3IP2-AS1-209ENST00000532226 2191 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC7.13□□□□□ -1.27
USB1Q9BQ65 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 AC026398.1-201ENST00000413683 3126 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
USB1Q9BQ65 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
USB1Q9BQ65 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
USB1Q9BQ65 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
USB1Q9BQ65 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 XPOTP1-201ENST00000443317 2398 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 FAM71F1-209ENST00000621392 1591 ntTSL 5 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 MSN-201ENST00000360270 3944 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 CDC27-201ENST00000066544 5801 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 GRAMD2B-212ENST00000513040 2196 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AL355488.2-201ENST00000609909 2850 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 SNORA71D-201ENST00000363484 134 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 MXI1-204ENST00000369612 879 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 RNU6-1040P-201ENST00000383974 107 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 RNU6-317P-201ENST00000384031 107 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 HSD17B7P1-201ENST00000412419 1017 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 CTSLP8-201ENST00000413075 967 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 ENTPD3-AS1-201ENST00000420850 791 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AL139396.1-201ENST00000421137 167 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC008267.5-201ENST00000424928 265 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC004160.2-201ENST00000425837 563 ntTSL 4 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AL590729.1-201ENST00000427046 573 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 RPL7L1P10-201ENST00000427790 463 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 LINC00665-202ENST00000427868 690 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 VDAC2P3-201ENST00000430995 828 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC074257.1-201ENST00000446340 585 ntTSL 4 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AL445466.1-201ENST00000448432 357 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 RPL23AP11-201ENST00000475260 469 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 UBA52P3-201ENST00000491303 382 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AL049874.2-201ENST00000492636 288 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 H3F3AP3-201ENST00000497682 407 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC112203.1-201ENST00000506315 1020 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC091839.1-201ENST00000513087 269 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC107959.3-202ENST00000523806 450 ntTSL 5 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 FTH1-207ENST00000532601 742 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC079384.1-201ENST00000548506 600 ntTSL 4 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 DSG1-AS1-204ENST00000581856 669 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 OR7A18P-201ENST00000600416 277 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 TATDN1-220ENST00000605953 726 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 MIR6807-201ENST00000621968 92 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC079801.1-201ENST00000623753 388 ntTSL 3 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC106782.7-201ENST00000624024 418 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC133555.5-201ENST00000624430 418 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 ERC1-204ENST00000397203 9118 ntTSL 5 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 TRIM53BP-201ENST00000532912 1720 ntBASIC7.12□□□□□ -1.27
USB1Q9BQ65 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
USB1Q9BQ65 AC073525.1-203ENST00000547040 2631 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.12□□□□□ -1.27
USB1Q9BQ65 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC7.11□□□□□ -1.27
USB1Q9BQ65 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC7.11□□□□□ -1.27
USB1Q9BQ65 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
USB1Q9BQ65 COL6A4P1-202ENST00000487147 4317 ntBASIC7.11□□□□□ -1.27
USB1Q9BQ65 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.11□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms