Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 AC087385.3-201ENST00000620477 187 ntBASIC4.31□□□□□ -1.72
USF1P22415 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC4.31□□□□□ -1.72
USF1P22415 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC4.31□□□□□ -1.72
USF1P22415 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
USF1P22415 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
USF1P22415 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
USF1P22415 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.31□□□□□ -1.72
USF1P22415 THAP12P5-201ENST00000405864 2275 ntBASIC4.3□□□□□ -1.72
USF1P22415 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
USF1P22415 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.3□□□□□ -1.72
USF1P22415 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.3□□□□□ -1.72
USF1P22415 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.3□□□□□ -1.72
USF1P22415 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.3□□□□□ -1.72
USF1P22415 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
USF1P22415 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
USF1P22415 RN7SKP95-201ENST00000362860 303 ntBASIC4.3□□□□□ -1.72
USF1P22415 RNA5SP87-201ENST00000384155 118 ntBASIC4.3□□□□□ -1.72
USF1P22415 SNORA66-201ENST00000384792 133 ntBASIC4.3□□□□□ -1.72
USF1P22415 RN7SKP247-201ENST00000411094 308 ntBASIC4.3□□□□□ -1.72
USF1P22415 CTSL3P-202ENST00000412179 788 ntBASIC4.3□□□□□ -1.72
USF1P22415 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC4.3□□□□□ -1.72
USF1P22415 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.3□□□□□ -1.72
USF1P22415 AC008072.1-201ENST00000434254 824 ntBASIC4.3□□□□□ -1.72
USF1P22415 ELOCP3-201ENST00000439303 348 ntBASIC4.3□□□□□ -1.72
USF1P22415 AC012512.1-201ENST00000446594 718 ntBASIC4.3□□□□□ -1.72
USF1P22415 AC009220.1-201ENST00000451614 275 ntBASIC4.3□□□□□ -1.72
USF1P22415 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.3□□□□□ -1.72
USF1P22415 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.3□□□□□ -1.72
USF1P22415 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 AL133372.1-201ENST00000493565 745 ntBASIC4.3□□□□□ -1.72
USF1P22415 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.3□□□□□ -1.72
USF1P22415 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.3□□□□□ -1.72
USF1P22415 AC006427.1-201ENST00000514359 712 ntBASIC4.3□□□□□ -1.72
USF1P22415 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.3□□□□□ -1.72
USF1P22415 AC021006.3-201ENST00000530771 192 ntBASIC4.3□□□□□ -1.72
USF1P22415 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 GSTP1P1-201ENST00000548078 319 ntBASIC4.3□□□□□ -1.72
USF1P22415 AC006349.1-201ENST00000555526 235 ntBASIC4.3□□□□□ -1.72
USF1P22415 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.3□□□□□ -1.72
USF1P22415 ELOCP28-201ENST00000590044 317 ntBASIC4.3□□□□□ -1.72
USF1P22415 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.3□□□□□ -1.72
USF1P22415 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 AC010615.3-201ENST00000597319 394 ntBASIC4.3□□□□□ -1.72
USF1P22415 AF230666.2-201ENST00000602328 725 ntBASIC4.3□□□□□ -1.72
USF1P22415 AL031320.1-201ENST00000604177 357 ntBASIC4.3□□□□□ -1.72
USF1P22415 AL162431.4-201ENST00000604674 411 ntBASIC4.3□□□□□ -1.72
USF1P22415 AL008729.2-201ENST00000606393 473 ntBASIC4.3□□□□□ -1.72
USF1P22415 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC4.3□□□□□ -1.72
USF1P22415 AC105105.5-201ENST00000622635 1294 ntBASIC4.3□□□□□ -1.72
USF1P22415 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
USF1P22415 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
USF1P22415 RBPJP2-201ENST00000618187 1444 ntBASIC4.29□□□□□ -1.72
USF1P22415 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
USF1P22415 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
USF1P22415 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USF1P22415 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC4.29□□□□□ -1.72
USF1P22415 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USF1P22415 AL034549.2-201ENST00000618285 3373 ntBASIC4.29□□□□□ -1.72
USF1P22415 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
USF1P22415 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USF1P22415 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.29□□□□□ -1.72
USF1P22415 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
USF1P22415 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
USF1P22415 MIR141-201ENST00000384975 95 ntBASIC4.29□□□□□ -1.72
USF1P22415 AC013442.1-201ENST00000397347 228 ntBASIC4.29□□□□□ -1.72
USF1P22415 AL121578.1-201ENST00000428051 892 ntBASIC4.29□□□□□ -1.72
USF1P22415 HMGB3P10-201ENST00000434734 572 ntBASIC4.29□□□□□ -1.72
USF1P22415 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.29□□□□□ -1.72
USF1P22415 RN7SL189P-201ENST00000468631 289 ntBASIC4.29□□□□□ -1.72
USF1P22415 RPL7AP10-201ENST00000481016 791 ntBASIC4.29□□□□□ -1.72
USF1P22415 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 176.5 ms