Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
PRKDCP78527 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC3.28□□□□□ -1.89
PRKDCP78527 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.89
PRKDCP78527 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 CTNND1-227ENST00000530748 5925 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.27□□□□□ -1.89
PRKDCP78527 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 RN7SKP153-201ENST00000365026 316 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PRKDCP78527 OR52E6-202ENST00000379946 954 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 RPL23AP43-201ENST00000446445 471 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 H2AFZP5-201ENST00000446960 382 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC3.27□□□□□ -1.89
PRKDCP78527 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC3.27□□□□□ -1.89
PRKDCP78527 GTF2IP22-201ENST00000554443 182 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 U3.53-201ENST00000628922 216 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC3.27□□□□□ -1.89
PRKDCP78527 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC3.27□□□□□ -1.89
PRKDCP78527 GTF2A1-203ENST00000553612 6306 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 MAPK1-201ENST00000215832 11022 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 SLMAP-203ENST00000383718 6749 ntTSL 2 BASIC3.27□□□□□ -1.89
PRKDCP78527 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.27□□□□□ -1.89
PRKDCP78527 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 LINC00993-201ENST00000420453 540 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 RPL23AP52-201ENST00000439311 478 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 AC025164.1-201ENST00000496249 478 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 CAB39P1-201ENST00000502277 460 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 AC096736.3-201ENST00000510753 993 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.27□□□□□ -1.89
PRKDCP78527 AC024224.1-201ENST00000538284 609 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.27□□□□□ -1.89
PRKDCP78527 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PRKDCP78527 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
PRKDCP78527 PTPRB-201ENST00000261266 6110 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 AC015813.3-201ENST00000584805 6113 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC3.27□□□□□ -1.89
PRKDCP78527 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 ATP5F1P4-201ENST00000397288 746 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC3.27□□□□□ -1.89
PRKDCP78527 RPL7P28-201ENST00000437739 740 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.27□□□□□ -1.89
PRKDCP78527 RPL37P3-201ENST00000456825 293 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 SNORA70.24-201ENST00000517233 118 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.27□□□□□ -1.89
PRKDCP78527 MTCYBP13-201ENST00000578634 1093 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 AL161729.3-201ENST00000603533 673 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC3.27□□□□□ -1.89
PRKDCP78527 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC3.27□□□□□ -1.89
PRKDCP78527 ERG-203ENST00000398905 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC3.27□□□□□ -1.89
PRKDCP78527 AC093591.2-201ENST00000565254 3843 ntBASIC3.27□□□□□ -1.89
PRKDCP78527 AC024560.2-201ENST00000507981 1497 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 DOCK1-201ENST00000280333 6797 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 SNRPFP1-201ENST00000414761 252 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 AL590399.2-201ENST00000427536 309 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.26□□□□□ -1.89
PRKDCP78527 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.26□□□□□ -1.89
PRKDCP78527 RNA5SP49-201ENST00000516450 115 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 DUXAP2-201ENST00000519198 589 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.26□□□□□ -1.89
PRKDCP78527 DYNLL1P4-201ENST00000549314 266 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.26□□□□□ -1.89
PRKDCP78527 TMEM30CP-203ENST00000637814 1035 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC3.26□□□□□ -1.89
PRKDCP78527 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC3.26□□□□□ -1.89
PRKDCP78527 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 NUP214-201ENST00000359428 7600 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 AL355488.2-201ENST00000609909 2850 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 MAPK6PS2-201ENST00000379571 2060 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
PRKDCP78527 RAB9AP3-201ENST00000412737 573 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.26□□□□□ -1.89
PRKDCP78527 RAB9AP1-201ENST00000449393 573 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 AC233982.1-201ENST00000451247 436 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 ATP5G1P3-201ENST00000463301 410 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.26□□□□□ -1.89
PRKDCP78527 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC3.26□□□□□ -1.89
PRKDCP78527 AC079880.2-201ENST00000603790 1213 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 AC099669.2-201ENST00000616549 437 ntBASIC3.26□□□□□ -1.89
PRKDCP78527 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC3.26□□□□□ -1.89
PRKDCP78527 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC3.26□□□□□ -1.89
PRKDCP78527 PDE4DIP-246ENST00000618462 8150 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
PRKDCP78527 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms