Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 AP001207.2-201ENST00000519490 539 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC013701.1-201ENST00000522657 465 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 IGHVIII-76-1-201ENST00000523776 286 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 OR8G5-201ENST00000524943 1041 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 PMS2P3-207ENST00000529061 717 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HOXA1P49639 RAB30-209ENST00000532548 644 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 RN7SL290P-201ENST00000578661 300 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 AP005119.1-201ENST00000580956 292 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC124283.4-201ENST00000581815 456 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC011500.1-201ENST00000601963 469 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC098935.2-201ENST00000604222 466 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AL136131.3-201ENST00000607600 188 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC009974.1-201ENST00000608881 455 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 AC245014.3-201ENST00000618589 347 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 AL109659.3-201ENST00000624985 950 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 AC245100.2-201ENST00000454544 1679 ntBASIC4.56□□□□□ -1.68
HOXA1P49639 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
HOXA1P49639 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
HOXA1P49639 PPP2R5E-202ENST00000422769 3478 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
HOXA1P49639 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
HOXA1P49639 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
HOXA1P49639 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA1P49639 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
HOXA1P49639 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
HOXA1P49639 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.55□□□□□ -1.68
HOXA1P49639 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
HOXA1P49639 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA1P49639 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
HOXA1P49639 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 RNA5SP326-201ENST00000363209 110 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC005042.1-201ENST00000393397 800 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA1P49639 OR51B3P-201ENST00000412287 913 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AL357752.1-201ENST00000412817 349 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA1P49639 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 TEX41-203ENST00000420472 765 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC023128.2-201ENST00000420880 1223 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 RPL36AP10-201ENST00000421785 322 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC104333.2-201ENST00000422630 192 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 RPS12P5-201ENST00000423449 371 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC126120.1-201ENST00000431082 470 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC005189.1-201ENST00000431286 310 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 ARAFP2-201ENST00000440565 559 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 MTCO1P53-201ENST00000441633 699 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 ELOCP13-201ENST00000443934 329 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC093166.3-201ENST00000448785 303 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 CYCSP42-201ENST00000450823 238 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 GEMIN2P1-201ENST00000454246 752 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC025459.1-201ENST00000504072 156 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC011411.1-201ENST00000509592 876 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 GUSBP9-201ENST00000510138 584 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 RN7SKP238-201ENST00000516483 249 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 SNORA31.13-201ENST00000516624 135 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 LACTB2-AS1-203ENST00000518553 817 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 AP003033.2-201ENST00000528901 805 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC4.55□□□□□ -1.68
HOXA1P49639 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 AGGF1P7-201ENST00000562369 913 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC010735.1-201ENST00000567305 1026 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms