Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C11orf88-203ENST00000529167 3099 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
COL8A1P27658 AC090643.1-201ENST00000623600 3100 ntBASIC6.41□□□□□ -1.38
COL8A1P27658 F13A1-201ENST00000264870 3999 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
COL8A1P27658 MKI67P1-201ENST00000604297 1460 ntBASIC6.41□□□□□ -1.38
COL8A1P27658 ZNF734P-201ENST00000419494 1534 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AC108099.1-201ENST00000564402 3258 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 CYP19A1-216ENST00000559878 1958 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC6.4□□□□□ -1.38
COL8A1P27658 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 HIPK1-201ENST00000340480 6997 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 HSP90AA2P-201ENST00000530115 2196 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC6.4□□□□□ -1.38
COL8A1P27658 SERPINB4-201ENST00000341074 1749 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 AC009135.2-201ENST00000624136 1768 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 CCR8-201ENST00000326306 1253 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 RNA5SP435-201ENST00000364044 108 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 Y_RNA.552-201ENST00000384665 112 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 RNU6-33P-201ENST00000384793 107 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 RNA5SP23-201ENST00000391006 105 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
COL8A1P27658 FCHSD2-202ENST00000409263 932 ntTSL 5 BASIC6.4□□□□□ -1.38
COL8A1P27658 AL451081.1-201ENST00000413159 245 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 AL354890.1-201ENST00000413730 346 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC6.4□□□□□ -1.38
COL8A1P27658 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 AC109583.1-201ENST00000432156 268 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC6.4□□□□□ -1.38
COL8A1P27658 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC6.4□□□□□ -1.38
COL8A1P27658 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 AC044784.1-201ENST00000456526 677 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 APOOP2-201ENST00000461561 539 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 NDUFS5P2-201ENST00000484004 306 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AC068781.1-201ENST00000488231 618 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC6.4□□□□□ -1.38
COL8A1P27658 VN1R104P-201ENST00000505115 1009 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 RNA5SP401-201ENST00000515920 127 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 TRIM51DP-201ENST00000529746 596 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC6.4□□□□□ -1.38
COL8A1P27658 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
COL8A1P27658 AL121594.2-201ENST00000541658 472 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.4□□□□□ -1.38
COL8A1P27658 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC6.4□□□□□ -1.38
COL8A1P27658 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC6.4□□□□□ -1.38
COL8A1P27658 CYP4A44P-201ENST00000569984 154 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC6.4□□□□□ -1.38
COL8A1P27658 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC6.4□□□□□ -1.38
COL8A1P27658 AC087763.1-201ENST00000603391 286 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 AC103710.4-201ENST00000609301 899 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC6.4□□□□□ -1.38
COL8A1P27658 AC124319.3-201ENST00000616832 526 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 RMST_9.1-201ENST00000619945 193 ntBASIC6.4□□□□□ -1.38
COL8A1P27658 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 GOSR2-238ENST00000640495 3395 ntTSL 5 BASIC6.4□□□□□ -1.38
COL8A1P27658 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
COL8A1P27658 NAT1-210ENST00000545197 1827 ntTSL 5 BASIC6.4□□□□□ -1.38
COL8A1P27658 ADGRL3-206ENST00000507164 4982 ntTSL 5 BASIC6.4□□□□□ -1.39
COL8A1P27658 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 FKTN-202ENST00000357998 2404 ntTSL 5 BASIC6.4□□□□□ -1.39
COL8A1P27658 OPALIN-203ENST00000393871 3545 ntTSL 2 BASIC6.4□□□□□ -1.39
COL8A1P27658 OTX2-201ENST00000339475 3001 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
COL8A1P27658 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.4□□□□□ -1.39
COL8A1P27658 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.4□□□□□ -1.39
COL8A1P27658 CASC19-221ENST00000641309 1382 ntBASIC6.4□□□□□ -1.39
COL8A1P27658 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 FANCD2P2-201ENST00000437591 1400 ntBASIC6.4□□□□□ -1.39
COL8A1P27658 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 MR1-208ENST00000614012 7860 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
COL8A1P27658 EFHC1-233ENST00000637353 3829 ntTSL 5 BASIC6.4□□□□□ -1.39
COL8A1P27658 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC6.4□□□□□ -1.39
COL8A1P27658 THSD4-AS1-202ENST00000562634 2182 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
COL8A1P27658 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC6.39□□□□□ -1.39
COL8A1P27658 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 ARMC3-203ENST00000409049 2479 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 BMX-203ENST00000357607 2598 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
COL8A1P27658 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL8A1P27658 UBAP2-204ENST00000379238 4289 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
COL8A1P27658 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.39□□□□□ -1.39
COL8A1P27658 HKR1-201ENST00000324411 2929 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 124.8 ms