Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL590763.1-201ENST00000398297 1545 ntBASIC5.73□□□□□ -1.49
BDNFP23560 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
BDNFP23560 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.73□□□□□ -1.49
BDNFP23560 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
BDNFP23560 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
BDNFP23560 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 MTCO3P4-201ENST00000419236 787 ntBASIC5.72□□□□□ -1.49
BDNFP23560 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.72□□□□□ -1.49
BDNFP23560 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC5.72□□□□□ -1.49
BDNFP23560 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
BDNFP23560 OR52B5P-201ENST00000435337 951 ntBASIC5.72□□□□□ -1.49
BDNFP23560 RPL37P3-201ENST00000456825 293 ntBASIC5.72□□□□□ -1.49
BDNFP23560 RN7SL172P-201ENST00000460535 303 ntBASIC5.72□□□□□ -1.49
BDNFP23560 RPS20P4-201ENST00000461659 355 ntBASIC5.72□□□□□ -1.49
BDNFP23560 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.72□□□□□ -1.49
BDNFP23560 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.72□□□□□ -1.49
BDNFP23560 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 AC068993.1-201ENST00000546724 589 ntBASIC5.72□□□□□ -1.49
BDNFP23560 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.72□□□□□ -1.49
BDNFP23560 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.72□□□□□ -1.49
BDNFP23560 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.72□□□□□ -1.49
BDNFP23560 RPL10P14-201ENST00000565265 298 ntBASIC5.72□□□□□ -1.49
BDNFP23560 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 AC016180.1-201ENST00000567945 403 ntBASIC5.72□□□□□ -1.49
BDNFP23560 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.72□□□□□ -1.49
BDNFP23560 AC011477.5-201ENST00000586571 259 ntBASIC5.72□□□□□ -1.49
BDNFP23560 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
BDNFP23560 AC135178.6-201ENST00000605314 398 ntBASIC5.72□□□□□ -1.49
BDNFP23560 AC015712.7-201ENST00000615211 635 ntBASIC5.72□□□□□ -1.49
BDNFP23560 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 AC003001.2-201ENST00000616294 831 ntBASIC5.72□□□□□ -1.49
BDNFP23560 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.72□□□□□ -1.49
BDNFP23560 OR52B5P-202ENST00000641118 1110 ntBASIC5.72□□□□□ -1.49
BDNFP23560 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.72□□□□□ -1.49
BDNFP23560 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
BDNFP23560 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
BDNFP23560 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BDNFP23560 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
BDNFP23560 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.71□□□□□ -1.49
BDNFP23560 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
BDNFP23560 AP002512.4-202ENST00000641599 4530 ntBASIC5.71□□□□□ -1.5
BDNFP23560 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.71□□□□□ -1.5
BDNFP23560 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
BDNFP23560 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
BDNFP23560 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
BDNFP23560 AC005294.1-201ENST00000355509 281 ntBASIC5.71□□□□□ -1.5
BDNFP23560 MIR223-201ENST00000385204 110 ntBASIC5.71□□□□□ -1.5
BDNFP23560 RNU1-149P-201ENST00000390870 161 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.71□□□□□ -1.5
BDNFP23560 RPL12P17-201ENST00000432393 498 ntBASIC5.71□□□□□ -1.5
BDNFP23560 PTP4A1P3-201ENST00000433661 420 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC245047.2-201ENST00000441060 530 ntBASIC5.71□□□□□ -1.5
BDNFP23560 MYO5BP2-201ENST00000449815 1277 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.71□□□□□ -1.5
BDNFP23560 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC5.71□□□□□ -1.5
BDNFP23560 AC083899.1-201ENST00000454465 3819 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC026348.1-201ENST00000462549 1053 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC092754.1-201ENST00000472975 479 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC072052.1-201ENST00000496556 306 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC008953.1-201ENST00000497334 318 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC021106.1-201ENST00000509020 1058 ntBASIC5.71□□□□□ -1.5
BDNFP23560 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC5.71□□□□□ -1.5
BDNFP23560 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC5.71□□□□□ -1.5
BDNFP23560 OR8G3P-201ENST00000533406 921 ntBASIC5.71□□□□□ -1.5
BDNFP23560 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.71□□□□□ -1.5
BDNFP23560 AC005341.1-201ENST00000571086 708 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC009237.13-201ENST00000603193 276 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC133552.5-201ENST00000604266 540 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC004775.1-201ENST00000607389 753 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC5.71□□□□□ -1.5
BDNFP23560 WWOX-217ENST00000620008 450 ntTSL 2 BASIC5.71□□□□□ -1.5
BDNFP23560 MIR6719-201ENST00000622428 87 ntBASIC5.71□□□□□ -1.5
BDNFP23560 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.71□□□□□ -1.5
BDNFP23560 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.71□□□□□ -1.5
BDNFP23560 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BDNFP23560 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC5.71□□□□□ -1.5
BDNFP23560 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BDNFP23560 AC092451.3-201ENST00000625067 1343 ntBASIC5.71□□□□□ -1.5
BDNFP23560 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.71□□□□□ -1.5
BDNFP23560 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.71□□□□□ -1.5
BDNFP23560 Z95114.1-201ENST00000624264 14574 ntBASIC5.71□□□□□ -1.5
BDNFP23560 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC5.71□□□□□ -1.5
BDNFP23560 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 MTND4P21-201ENST00000453886 1357 ntBASIC5.7□□□□□ -1.5
BDNFP23560 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
BDNFP23560 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
BDNFP23560 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
BDNFP23560 SNORA67-201ENST00000384423 137 ntBASIC5.7□□□□□ -1.5
BDNFP23560 SNORD56.6-201ENST00000384569 71 ntBASIC5.7□□□□□ -1.5
BDNFP23560 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms