Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC011447.7-201ENST00000624228 1590 ntBASIC4.63□□□□□ -1.67
COL5A1P20908 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.63□□□□□ -1.67
COL5A1P20908 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A1P20908 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.63□□□□□ -1.67
COL5A1P20908 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.67
COL5A1P20908 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 AC008758.3-201ENST00000507003 1829 ntBASIC4.63□□□□□ -1.67
COL5A1P20908 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A1P20908 DMD-211ENST00000378707 7410 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A1P20908 AC017079.1-201ENST00000333650 415 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 MIR208A-201ENST00000362287 71 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 SNORA71.2-201ENST00000364941 134 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 RNU1-64P-201ENST00000365443 163 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.62□□□□□ -1.67
COL5A1P20908 LINC00993-201ENST00000420453 540 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.62□□□□□ -1.67
COL5A1P20908 YWHAZP2-201ENST00000440317 728 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.62□□□□□ -1.67
COL5A1P20908 NPM1P6-201ENST00000521088 871 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.62□□□□□ -1.67
COL5A1P20908 AGGF1P9-201ENST00000561884 913 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC4.62□□□□□ -1.67
COL5A1P20908 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.62□□□□□ -1.67
COL5A1P20908 MIR3939-201ENST00000582614 106 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 AL049794.2-201ENST00000616301 365 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
COL5A1P20908 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 AL137141.1-201ENST00000624622 4836 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.62□□□□□ -1.67
COL5A1P20908 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
COL5A1P20908 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 AL357515.1-201ENST00000402967 542 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 VTI1BP4-201ENST00000427516 527 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.62□□□□□ -1.67
COL5A1P20908 AC245028.2-201ENST00000458673 253 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 RNA5SP464-201ENST00000516251 108 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.62□□□□□ -1.67
COL5A1P20908 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.62□□□□□ -1.67
COL5A1P20908 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.62□□□□□ -1.67
COL5A1P20908 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 AC093227.2-201ENST00000589357 285 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.62□□□□□ -1.67
COL5A1P20908 NOL8P1-201ENST00000508336 3529 ntBASIC4.62□□□□□ -1.67
COL5A1P20908 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL5A1P20908 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.62□□□□□ -1.67
COL5A1P20908 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.61□□□□□ -1.67
COL5A1P20908 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
COL5A1P20908 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 AC109446.4-201ENST00000623235 2755 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
COL5A1P20908 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.61□□□□□ -1.67
COL5A1P20908 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 RNA5SP509-201ENST00000364577 119 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 RNU1-82P-201ENST00000390851 165 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.61□□□□□ -1.67
COL5A1P20908 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.61□□□□□ -1.67
COL5A1P20908 AL162591.2-201ENST00000449634 317 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 MTND2P28-201ENST00000457540 1044 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 AC073358.1-201ENST00000505671 684 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.61□□□□□ -1.67
COL5A1P20908 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.61□□□□□ -1.67
COL5A1P20908 AC127024.5-201ENST00000580085 462 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 AC093765.1-201ENST00000603758 881 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 AC100847.1-201ENST00000611316 481 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC4.61□□□□□ -1.67
COL5A1P20908 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.61□□□□□ -1.67
COL5A1P20908 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
COL5A1P20908 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
COL5A1P20908 AC097063.1-201ENST00000426714 1797 ntBASIC4.61□□□□□ -1.67
COL5A1P20908 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
COL5A1P20908 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.61□□□□□ -1.67
COL5A1P20908 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.61□□□□□ -1.67
COL5A1P20908 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms