Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 NANOGP10-201ENST00000453325 895 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 SLC25A51P1-201ENST00000468432 871 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.73□□□□□ -1.65
COL6A3P12111 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.73□□□□□ -1.65
COL6A3P12111 RN7SKP98-201ENST00000517070 156 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.73□□□□□ -1.65
COL6A3P12111 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.73□□□□□ -1.65
COL6A3P12111 AC068722.2-201ENST00000618734 544 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 AC055839.1-201ENST00000634467 498 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 HSPD1P8-201ENST00000400121 1658 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
COL6A3P12111 CPM-201ENST00000338356 6636 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A3P12111 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A3P12111 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.72□□□□□ -1.65
COL6A3P12111 RNVU1-14-201ENST00000384770 164 ntBASIC4.72□□□□□ -1.65
COL6A3P12111 U3.28-201ENST00000391249 210 ntBASIC4.72□□□□□ -1.65
COL6A3P12111 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.72□□□□□ -1.65
COL6A3P12111 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A3P12111 RPL21P8-201ENST00000465083 535 ntBASIC4.72□□□□□ -1.65
COL6A3P12111 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A3P12111 AC005412.2-201ENST00000492004 341 ntBASIC4.72□□□□□ -1.65
COL6A3P12111 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.72□□□□□ -1.65
COL6A3P12111 uc_338.7-201ENST00000621834 124 ntBASIC4.72□□□□□ -1.65
COL6A3P12111 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A3P12111 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC4.72□□□□□ -1.65
COL6A3P12111 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
COL6A3P12111 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
COL6A3P12111 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.72□□□□□ -1.65
COL6A3P12111 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
COL6A3P12111 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
COL6A3P12111 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A3P12111 METTL14-201ENST00000388822 6669 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A3P12111 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A3P12111 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A3P12111 KCTD9P2-201ENST00000512203 1013 ntBASIC4.72□□□□□ -1.65
COL6A3P12111 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A3P12111 MTCO3P22-201ENST00000603219 784 ntBASIC4.72□□□□□ -1.65
COL6A3P12111 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A3P12111 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A3P12111 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A3P12111 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A3P12111 AC008124.1-201ENST00000609803 9730 ntBASIC4.72□□□□□ -1.65
COL6A3P12111 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.72□□□□□ -1.65
COL6A3P12111 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.72□□□□□ -1.65
COL6A3P12111 SLC5A1-204ENST00000543737 4752 ntTSL 2 BASIC4.71□□□□□ -1.65
COL6A3P12111 SCAND3P1-201ENST00000439854 1060 ntBASIC4.71□□□□□ -1.65
COL6A3P12111 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.71□□□□□ -1.65
COL6A3P12111 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.71□□□□□ -1.65
COL6A3P12111 AC010486.1-201ENST00000511793 424 ntBASIC4.71□□□□□ -1.65
COL6A3P12111 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.71□□□□□ -1.65
COL6A3P12111 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC4.71□□□□□ -1.65
COL6A3P12111 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.71□□□□□ -1.65
COL6A3P12111 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL6A3P12111 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.65
COL6A3P12111 OR5H1-202ENST00000641874 5999 ntAPPRIS P1 BASIC4.71□□□□□ -1.65
COL6A3P12111 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.65
COL6A3P12111 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
COL6A3P12111 AC016745.2-201ENST00000608834 3443 ntBASIC4.71□□□□□ -1.65
COL6A3P12111 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL6A3P12111 SCAF11-205ENST00000465950 5296 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 AL512649.1-201ENST00000428997 581 ntBASIC4.71□□□□□ -1.66
COL6A3P12111 RPL5P24-201ENST00000463742 885 ntBASIC4.71□□□□□ -1.66
COL6A3P12111 RPS26P28-201ENST00000470806 348 ntBASIC4.71□□□□□ -1.66
COL6A3P12111 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 CSNK1A1-205ENST00000515435 1856 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A3P12111 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC4.71□□□□□ -1.66
COL6A3P12111 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
COL6A3P12111 AL158152.1-201ENST00000602652 1435 ntBASIC4.71□□□□□ -1.66
COL6A3P12111 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A3P12111 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
COL6A3P12111 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
COL6A3P12111 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.71□□□□□ -1.66
COL6A3P12111 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.71□□□□□ -1.66
COL6A3P12111 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A3P12111 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC4.71□□□□□ -1.66
COL6A3P12111 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A3P12111 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC4.71□□□□□ -1.66
COL6A3P12111 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
COL6A3P12111 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A3P12111 MAP3K9-207ENST00000611979 10497 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A3P12111 OR8F1P-201ENST00000425243 930 ntBASIC4.7□□□□□ -1.66
COL6A3P12111 AL034408.1-202ENST00000636088 415 ntBASIC4.7□□□□□ -1.66
COL6A3P12111 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A3P12111 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
COL6A3P12111 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A3P12111 MAPK10-263ENST00000641052 4307 ntBASIC4.7□□□□□ -1.66
COL6A3P12111 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms