Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL4A1P02462 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A1P02462 CACNA1E-202ENST00000358338 14700 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL4A1P02462 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
COL4A1P02462 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A1P02462 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A1P02462 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A1P02462 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL4A1P02462 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
COL4A1P02462 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A1P02462 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A1P02462 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.59□□□□□ -1.51
COL4A1P02462 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.59□□□□□ -1.51
COL4A1P02462 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.59□□□□□ -1.51
COL4A1P02462 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A1P02462 AC104333.2-201ENST00000422630 192 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 AL157385.1-201ENST00000446973 268 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.59□□□□□ -1.52
COL4A1P02462 ISCUP1-201ENST00000454451 448 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A1P02462 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 OR8A2P-201ENST00000528631 952 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.59□□□□□ -1.52
COL4A1P02462 RN7SL176P-201ENST00000580352 264 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A1P02462 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A1P02462 RNA5SP196-201ENST00000625967 102 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A1P02462 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A1P02462 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A1P02462 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A1P02462 AL117339.4-201ENST00000608335 7063 ntBASIC5.59□□□□□ -1.52
COL4A1P02462 MDM4-204ENST00000367183 9098 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A1P02462 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A1P02462 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A1P02462 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A1P02462 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A1P02462 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A1P02462 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A1P02462 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A1P02462 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A1P02462 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
COL4A1P02462 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL4A1P02462 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A1P02462 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A1P02462 RPL17P36-201ENST00000420302 549 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 Z74021.1-201ENST00000423610 407 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 NFYAP1-201ENST00000431953 972 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 NDUFA5P1-201ENST00000433858 341 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.58□□□□□ -1.52
COL4A1P02462 ACTR3P2-201ENST00000439585 1257 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 AC106806.2-201ENST00000509365 500 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 MTCO1P35-201ENST00000515270 228 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 AC097486.1-201ENST00000515331 210 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 RNA5SP116-201ENST00000516132 98 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.58□□□□□ -1.52
COL4A1P02462 AC006349.1-201ENST00000555526 235 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
COL4A1P02462 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.58□□□□□ -1.52
COL4A1P02462 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
COL4A1P02462 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
COL4A1P02462 LINC00622-201ENST00000562811 1570 ntBASIC5.58□□□□□ -1.52
COL4A1P02462 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.58□□□□□ -1.52
COL4A1P02462 ASXL2-201ENST00000336112 8889 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC5.57□□□□□ -1.52
COL4A1P02462 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A1P02462 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC5.57□□□□□ -1.52
COL4A1P02462 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.57□□□□□ -1.52
COL4A1P02462 RPL32P23-201ENST00000397237 405 ntBASIC5.57□□□□□ -1.52
COL4A1P02462 TMBIM7P-201ENST00000418074 855 ntBASIC5.57□□□□□ -1.52
COL4A1P02462 RPL21P43-201ENST00000425440 472 ntBASIC5.57□□□□□ -1.52
COL4A1P02462 NPM1P26-201ENST00000426339 738 ntBASIC5.57□□□□□ -1.52
COL4A1P02462 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC5.57□□□□□ -1.52
COL4A1P02462 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC5.57□□□□□ -1.52
COL4A1P02462 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 CYCSP24-201ENST00000445119 316 ntBASIC5.57□□□□□ -1.52
COL4A1P02462 AC053481.1-201ENST00000467217 306 ntBASIC5.57□□□□□ -1.52
COL4A1P02462 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.57□□□□□ -1.52
COL4A1P02462 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.57□□□□□ -1.52
COL4A1P02462 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC5.57□□□□□ -1.52
COL4A1P02462 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC5.57□□□□□ -1.52
COL4A1P02462 AL023881.1-201ENST00000621088 301 ntBASIC5.57□□□□□ -1.52
COL4A1P02462 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
COL4A1P02462 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.57□□□□□ -1.52
COL4A1P02462 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
COL4A1P02462 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.57□□□□□ -1.52
COL4A1P02462 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
COL4A1P02462 AL731566.1-201ENST00000620490 1937 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 84.7 ms