Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RNA5SP518-201ENST00000515957 119 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RNU6-528P-201ENST00000516926 100 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 OR5M6P-201ENST00000530227 937 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 NDUFA3P2-201ENST00000531434 232 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AL078601.3-201ENST00000573303 535 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RN7SL657P-201ENST00000582431 293 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC023421.2-202ENST00000586213 547 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 CKS1BP3-201ENST00000600888 237 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 DUXAP4-201ENST00000603046 613 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AL359999.1-201ENST00000604513 294 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RPL12P48-201ENST00000605620 304 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AL161931.1-201ENST00000612768 246 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC025253.1-201ENST00000613623 543 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC063943.3-201ENST00000615562 356 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC009120.7-201ENST00000623452 780 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 LRRC77P-213ENST00000637727 880 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 LINC01772-201ENST00000457898 3245 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 CDY2A-202ENST00000426790 2369 ntAPPRIS P5 TSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 CDY2B-202ENST00000544303 2369 ntAPPRIS P5 TSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AL450327.1-201ENST00000430931 2632 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 RARSP1-201ENST00000542842 1418 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC104837.1-201ENST00000444644 1587 ntBASIC5.46□□□□□ -1.54
CCDC140Q96MF4 ZFP37-201ENST00000374227 6266 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC140Q96MF4 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 CTAGE11P-201ENST00000451540 2353 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 MEF2C-217ENST00000510942 3446 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 CHORDC1-201ENST00000320585 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 PCDH11Y-204ENST00000400457 9039 ntAPPRIS P5 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 ACSL5-203ENST00000356116 3353 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 LINC01505-203ENST00000435485 1686 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RNY4P14-201ENST00000363656 96 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 MXI1-204ENST00000369612 879 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 Y_RNA.402-201ENST00000383972 102 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RPS20P2-201ENST00000402520 389 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RPL6P29-201ENST00000414863 865 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 GRPEL2P2-201ENST00000421856 670 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC096632.1-201ENST00000427395 310 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RPS27AP6-201ENST00000427962 448 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 FTLP19-201ENST00000433300 394 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RPS3AP54-201ENST00000435535 734 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 RSU1P2-202ENST00000437884 485 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AL390728.3-201ENST00000452704 270 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 MTND2P24-201ENST00000453434 806 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 BX323845.2-201ENST00000458382 234 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 TUBBP11-201ENST00000472255 252 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 AL591122.1-201ENST00000487348 492 ntBASIC5.45□□□□□ -1.54
CCDC140Q96MF4 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC140Q96MF4 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms