Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA1P55317 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.55□□□□□ -1.68
FOXA1P55317 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 NCLP2-201ENST00000416078 1462 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
FOXA1P55317 RARSP1-201ENST00000542842 1418 ntBASIC4.55□□□□□ -1.68
FOXA1P55317 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA1P55317 MAPK10-349ENST00000641767 3661 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA1P55317 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
FOXA1P55317 IRF5P1-201ENST00000504852 2164 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 C4BPAP1-201ENST00000415474 1893 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 AL442639.1-201ENST00000625030 1899 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA1P55317 MIPEPP2-201ENST00000422560 1819 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
FOXA1P55317 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
FOXA1P55317 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA1P55317 RN7SKP104-201ENST00000362605 328 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 RNA5SP123-201ENST00000363244 119 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA1P55317 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
FOXA1P55317 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA1P55317 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA1P55317 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA1P55317 RN7SL346P-201ENST00000491561 294 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 GAPDHP56-201ENST00000506031 988 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 AC006499.3-201ENST00000506077 748 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.54□□□□□ -1.68
FOXA1P55317 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.54□□□□□ -1.68
FOXA1P55317 AC090022.1-201ENST00000546569 311 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 HAUS8P1-201ENST00000549005 542 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA1P55317 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.54□□□□□ -1.68
FOXA1P55317 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXA1P55317 AC073137.1-201ENST00000605636 634 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 AC073575.2-201ENST00000614212 627 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 uc_338.18-201ENST00000615451 175 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 AC112694.2-201ENST00000623697 768 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA1P55317 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.54□□□□□ -1.68
FOXA1P55317 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.54□□□□□ -1.68
FOXA1P55317 AL355852.1-201ENST00000454081 1771 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXA1P55317 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
FOXA1P55317 AL136164.3-201ENST00000624429 3978 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.54□□□□□ -1.68
FOXA1P55317 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.54□□□□□ -1.68
FOXA1P55317 HSPD1P14-201ENST00000432666 1618 ntBASIC4.54□□□□□ -1.68
FOXA1P55317 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
FOXA1P55317 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 MIR921-201ENST00000401133 56 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA1P55317 NACAP7-201ENST00000407371 609 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA1P55317 RPL21P43-201ENST00000425440 472 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.53□□□□□ -1.68
FOXA1P55317 ATP5G1P3-201ENST00000463301 410 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXA1P55317 RNA5SP446-201ENST00000515955 82 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.53□□□□□ -1.68
FOXA1P55317 AC105129.1-201ENST00000560250 297 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXA1P55317 NPM1P45-201ENST00000583151 559 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.53□□□□□ -1.68
FOXA1P55317 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.53□□□□□ -1.68
FOXA1P55317 AL121612.2-201ENST00000612261 482 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 AC140113.4-201ENST00000622087 222 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 AC011815.3-201ENST00000624194 473 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
FOXA1P55317 AP001273.1-201ENST00000624493 3152 ntBASIC4.53□□□□□ -1.68
FOXA1P55317 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.53□□□□□ -1.69
FOXA1P55317 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 HSPA8P18-201ENST00000439846 1928 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
FOXA1P55317 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms