Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.65□□□□□ -1.66
COL5A1P20908 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL5A1P20908 AC006349.1-201ENST00000555526 235 ntBASIC4.65□□□□□ -1.66
COL5A1P20908 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.65□□□□□ -1.66
COL5A1P20908 AC023575.1-201ENST00000580510 358 ntBASIC4.65□□□□□ -1.66
COL5A1P20908 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC4.65□□□□□ -1.66
COL5A1P20908 MIR6716-201ENST00000613413 80 ntBASIC4.65□□□□□ -1.66
COL5A1P20908 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL5A1P20908 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.65□□□□□ -1.66
COL5A1P20908 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL5A1P20908 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
COL5A1P20908 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL5A1P20908 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.65□□□□□ -1.66
COL5A1P20908 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.65□□□□□ -1.66
COL5A1P20908 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.65□□□□□ -1.66
COL5A1P20908 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A1P20908 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A1P20908 AP000473.2-201ENST00000602659 1537 ntBASIC4.65□□□□□ -1.67
COL5A1P20908 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
COL5A1P20908 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A1P20908 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
COL5A1P20908 TLK1P1-201ENST00000456760 2440 ntBASIC4.65□□□□□ -1.67
COL5A1P20908 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A1P20908 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A1P20908 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.65□□□□□ -1.67
COL5A1P20908 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL5A1P20908 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.65□□□□□ -1.67
COL5A1P20908 RPL32P23-201ENST00000397237 405 ntBASIC4.65□□□□□ -1.67
COL5A1P20908 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.65□□□□□ -1.67
COL5A1P20908 AC006065.1-201ENST00000422539 802 ntBASIC4.65□□□□□ -1.67
COL5A1P20908 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.65□□□□□ -1.67
COL5A1P20908 RPL7P32-201ENST00000457119 744 ntBASIC4.65□□□□□ -1.67
COL5A1P20908 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.65□□□□□ -1.67
COL5A1P20908 AC109635.6-201ENST00000525487 1113 ntBASIC4.65□□□□□ -1.67
COL5A1P20908 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.65□□□□□ -1.67
COL5A1P20908 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.65□□□□□ -1.67
COL5A1P20908 AC034105.4-201ENST00000568304 277 ntBASIC4.65□□□□□ -1.67
COL5A1P20908 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.67
COL5A1P20908 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.65□□□□□ -1.67
COL5A1P20908 AP000843.1-201ENST00000624880 701 ntBASIC4.65□□□□□ -1.67
COL5A1P20908 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 AC004817.4-201ENST00000602396 3625 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL5A1P20908 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL5A1P20908 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL5A1P20908 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL5A1P20908 DMD-205ENST00000359836 7339 ntTSL 5 BASIC4.64□□□□□ -1.67
COL5A1P20908 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 RNU1-13P-201ENST00000384499 162 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 RPS27AP12-201ENST00000429552 465 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.64□□□□□ -1.67
COL5A1P20908 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC4.64□□□□□ -1.67
COL5A1P20908 AL450023.3-201ENST00000440592 271 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 Z95327.1-201ENST00000446082 482 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 EEF1A1P1-201ENST00000447052 739 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC4.64□□□□□ -1.67
COL5A1P20908 AC023424.1-201ENST00000496058 459 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.64□□□□□ -1.67
COL5A1P20908 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.64□□□□□ -1.67
COL5A1P20908 AC004232.3-201ENST00000622977 525 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC4.64□□□□□ -1.67
COL5A1P20908 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 AC025574.1-201ENST00000554784 1653 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 AC020656.2-201ENST00000613291 5309 ntBASIC4.64□□□□□ -1.67
COL5A1P20908 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.64□□□□□ -1.67
COL5A1P20908 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL5A1P20908 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.63□□□□□ -1.67
COL5A1P20908 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
COL5A1P20908 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
COL5A1P20908 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
COL5A1P20908 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A1P20908 RNU4-39P-201ENST00000362455 127 ntBASIC4.63□□□□□ -1.67
COL5A1P20908 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
COL5A1P20908 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A1P20908 UQCRBP1-201ENST00000421129 336 ntBASIC4.63□□□□□ -1.67
COL5A1P20908 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.63□□□□□ -1.67
COL5A1P20908 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC4.63□□□□□ -1.67
COL5A1P20908 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
COL5A1P20908 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.63□□□□□ -1.67
COL5A1P20908 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
COL5A1P20908 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A1P20908 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC4.63□□□□□ -1.67
COL5A1P20908 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.63□□□□□ -1.67
COL5A1P20908 AC245389.1-201ENST00000605141 529 ntBASIC4.63□□□□□ -1.67
COL5A1P20908 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL5A1P20908 AL121890.3-201ENST00000618494 516 ntBASIC4.63□□□□□ -1.67
COL5A1P20908 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.63□□□□□ -1.67
COL5A1P20908 AC067931.1-201ENST00000624190 671 ntBASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms