Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.75□□□□□ -1.65
COL6A3P12111 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
COL6A3P12111 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.75□□□□□ -1.65
COL6A3P12111 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 ROBO1-202ENST00000464233 6742 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
COL6A3P12111 AC021146.4-201ENST00000309229 279 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 SNORD1C-201ENST00000363315 78 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 E2F6P2-201ENST00000420708 748 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 NPM1P34-201ENST00000428821 893 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A3P12111 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.75□□□□□ -1.65
COL6A3P12111 GTF2IP8-201ENST00000560687 584 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A3P12111 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.75□□□□□ -1.65
COL6A3P12111 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.75□□□□□ -1.65
COL6A3P12111 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 AC092111.2-201ENST00000611627 1414 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 AC063976.2-201ENST00000425667 3556 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
COL6A3P12111 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A3P12111 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A3P12111 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A3P12111 ICE2P1-201ENST00000512800 1849 ntBASIC4.74□□□□□ -1.65
COL6A3P12111 AC099654.3-201ENST00000447087 1546 ntBASIC4.74□□□□□ -1.65
COL6A3P12111 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
COL6A3P12111 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 LINC00993-201ENST00000420453 540 ntBASIC4.74□□□□□ -1.65
COL6A3P12111 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
COL6A3P12111 AC011816.2-201ENST00000607089 556 ntBASIC4.74□□□□□ -1.65
COL6A3P12111 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 TEX41-280ENST00000629185 591 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC4.74□□□□□ -1.65
COL6A3P12111 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
COL6A3P12111 ZNF402P-201ENST00000404435 3100 ntBASIC4.74□□□□□ -1.65
COL6A3P12111 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 GTF2IP22-201ENST00000554443 182 ntBASIC4.74□□□□□ -1.65
COL6A3P12111 HSPE1P5-201ENST00000561489 272 ntBASIC4.74□□□□□ -1.65
COL6A3P12111 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC4.74□□□□□ -1.65
COL6A3P12111 AL139124.1-201ENST00000609123 421 ntBASIC4.74□□□□□ -1.65
COL6A3P12111 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 CHD2-201ENST00000394196 9363 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 PAX6-209ENST00000419022 6888 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 LIMCH1-202ENST00000381753 5705 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 CD109-202ENST00000422508 9221 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
COL6A3P12111 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL6A3P12111 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC4.74□□□□□ -1.65
COL6A3P12111 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC4.73□□□□□ -1.65
COL6A3P12111 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 AL136126.1-201ENST00000473603 402 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.73□□□□□ -1.65
COL6A3P12111 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 CR392039.4-201ENST00000624968 501 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 OR4K17-202ENST00000641386 4886 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
COL6A3P12111 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 RAPGEF5-212ENST00000620335 5506 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 SDHCP2-201ENST00000398565 501 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 RPL7P33-201ENST00000444159 742 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 PTMAP3-201ENST00000447474 330 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 ACTR3P3-201ENST00000480448 893 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 RPL7P41-201ENST00000485823 957 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.73□□□□□ -1.65
COL6A3P12111 AL031985.2-201ENST00000600955 480 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 MAPK10-304ENST00000641341 3984 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 KAT6B-205ENST00000372725 6944 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
COL6A3P12111 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A3P12111 AL731532.1-201ENST00000623972 4236 ntBASIC4.73□□□□□ -1.65
COL6A3P12111 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms