Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 RPL31P44-201ENST00000447680 377 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.37□□□□□ -1.71
FOXF1Q12946 RPS3AP53-201ENST00000454716 778 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXF1Q12946 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AC090686.1-201ENST00000481577 749 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 RN7SL591P-201ENST00000496150 292 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 RNA5SP249-201ENST00000516127 99 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXF1Q12946 BGLT3-201ENST00000564523 994 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AC233702.9-201ENST00000581528 203 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AL121932.1-201ENST00000605542 214 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AC007497.1-201ENST00000610421 561 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.37□□□□□ -1.71
FOXF1Q12946 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.37□□□□□ -1.71
FOXF1Q12946 DDX18P5-201ENST00000534547 1306 ntBASIC4.37□□□□□ -1.71
FOXF1Q12946 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
FOXF1Q12946 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.37□□□□□ -1.71
FOXF1Q12946 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC4.37□□□□□ -1.71
FOXF1Q12946 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
FOXF1Q12946 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
FOXF1Q12946 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
FOXF1Q12946 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
FOXF1Q12946 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXF1Q12946 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
FOXF1Q12946 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
FOXF1Q12946 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXF1Q12946 AC132825.1-201ENST00000463573 2247 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 STX3-208ENST00000641815 3236 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 MIR550A3-201ENST00000390735 95 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 SETP15-201ENST00000412724 337 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXF1Q12946 LINC00993-201ENST00000420453 540 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AC004074.1-201ENST00000421810 1063 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXF1Q12946 AC007559.1-201ENST00000428736 355 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 OR2B7P-201ENST00000429302 934 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXF1Q12946 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXF1Q12946 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXF1Q12946 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXF1Q12946 OR1H1P-201ENST00000448731 937 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 RBMY2TP-201ENST00000451162 947 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AL356390.1-201ENST00000455684 397 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 RNA5SP103-201ENST00000459503 118 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 NPM1P29-201ENST00000483112 803 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AC083982.1-201ENST00000485679 344 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC4.36□□□□□ -1.71
FOXF1Q12946 RNA5SP464-201ENST00000516251 108 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXF1Q12946 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.36□□□□□ -1.71
FOXF1Q12946 BRD9P1-201ENST00000529855 560 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXF1Q12946 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXF1Q12946 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXF1Q12946 AC133555.2-201ENST00000550213 292 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXF1Q12946 AC093249.4-201ENST00000564755 259 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 RN7SL802P-201ENST00000577858 299 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXF1Q12946 MIR3667-201ENST00000581025 74 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.36□□□□□ -1.71
FOXF1Q12946 AC022726.1-201ENST00000587475 207 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AC005084.1-201ENST00000605160 304 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 FAM27B-201ENST00000610601 213 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXF1Q12946 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.36□□□□□ -1.71
FOXF1Q12946 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.36□□□□□ -1.71
FOXF1Q12946 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
FOXF1Q12946 TLK1P1-201ENST00000456760 2440 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 AC107068.1-201ENST00000563286 4218 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 NCLP2-201ENST00000416078 1462 ntBASIC4.36□□□□□ -1.71
FOXF1Q12946 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
FOXF1Q12946 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.35□□□□□ -1.71
FOXF1Q12946 TET1P1-201ENST00000426627 2301 ntBASIC4.35□□□□□ -1.71
FOXF1Q12946 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.35□□□□□ -1.71
FOXF1Q12946 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.35□□□□□ -1.71
FOXF1Q12946 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.35□□□□□ -1.71
FOXF1Q12946 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
FOXF1Q12946 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms