Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC2.86□□□□□ -1.95
HSPG2P98160 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC2.85□□□□□ -1.95
HSPG2P98160 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 AP001029.2-203ENST00000589795 4910 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 MIR7-3-201ENST00000384898 110 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC2.85□□□□□ -1.95
HSPG2P98160 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 NPM1P41-201ENST00000512920 831 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC2.85□□□□□ -1.95
HSPG2P98160 RN7SL600P-201ENST00000581811 299 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 AC108359.1-201ENST00000616451 1211 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 AC112484.5-201ENST00000624189 228 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 ATP2B4-203ENST00000357681 8968 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC2.85□□□□□ -1.95
HSPG2P98160 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 Z92545.1-201ENST00000411782 234 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 ANK3-207ENST00000460468 677 ntTSL 3 BASIC2.85□□□□□ -1.95
HSPG2P98160 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.85□□□□□ -1.95
HSPG2P98160 RNU1-6P-201ENST00000516290 144 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC2.85□□□□□ -1.95
HSPG2P98160 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC2.85□□□□□ -1.95
HSPG2P98160 DUX4L52-201ENST00000549363 777 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 AL442067.2-201ENST00000614033 363 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC2.85□□□□□ -1.95
HSPG2P98160 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 FARP1-219ENST00000596580 13532 ntTSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 AP000907.1-201ENST00000428428 510 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC2.85□□□□□ -1.95
HSPG2P98160 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC2.85□□□□□ -1.95
HSPG2P98160 HSPE1P5-201ENST00000561489 272 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 MIR7151-201ENST00000617477 60 ntBASIC2.85□□□□□ -1.95
HSPG2P98160 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
HSPG2P98160 AL512634.1-201ENST00000566873 2432 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 DDI2-202ENST00000480945 10625 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
HSPG2P98160 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC2.85□□□□□ -1.95
HSPG2P98160 MITF-203ENST00000328528 4680 ntTSL 5 BASIC2.85□□□□□ -1.95
HSPG2P98160 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
HSPG2P98160 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC2.84□□□□□ -1.95
HSPG2P98160 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 SLC7A6-209ENST00000566454 6308 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
HSPG2P98160 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
HSPG2P98160 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.84□□□□□ -1.95
HSPG2P98160 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC2.84□□□□□ -1.95
HSPG2P98160 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC2.84□□□□□ -1.95
HSPG2P98160 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 RYBP-201ENST00000477973 7215 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC2.84□□□□□ -1.95
HSPG2P98160 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 AC092162.3-201ENST00000624511 1624 ntBASIC2.84□□□□□ -1.95
HSPG2P98160 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
HSPG2P98160 MGP-201ENST00000228938 694 ntTSL 3 BASIC2.84□□□□□ -1.95
HSPG2P98160 MIR34B-201ENST00000385076 84 ntBASIC2.84□□□□□ -1.95
HSPG2P98160 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC2.84□□□□□ -1.95
HSPG2P98160 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.84□□□□□ -1.95
HSPG2P98160 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC2.84□□□□□ -1.95
HSPG2P98160 PGBD4P4-201ENST00000509673 613 ntBASIC2.84□□□□□ -1.95
HSPG2P98160 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC2.84□□□□□ -1.95
HSPG2P98160 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC2.84□□□□□ -1.95
HSPG2P98160 MIR6133-201ENST00000617057 108 ntBASIC2.84□□□□□ -1.95
HSPG2P98160 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC2.84□□□□□ -1.95
HSPG2P98160 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC2.84□□□□□ -1.95
HSPG2P98160 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC2.84□□□□□ -1.95
HSPG2P98160 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC2.84□□□□□ -1.95
HSPG2P98160 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC2.84□□□□□ -1.95
HSPG2P98160 DGKK-201ENST00000611977 7407 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC2.84□□□□□ -1.95
HSPG2P98160 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC2.84□□□□□ -1.95
HSPG2P98160 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC2.84□□□□□ -1.95
HSPG2P98160 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HSPG2P98160 MIR383-201ENST00000362257 73 ntBASIC2.84□□□□□ -1.96
HSPG2P98160 RN7SKP17-201ENST00000411242 351 ntBASIC2.84□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms