Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
BRCA1P38398 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
BRCA1P38398 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC5.79□□□□□ -1.48
BRCA1P38398 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.79□□□□□ -1.48
BRCA1P38398 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.79□□□□□ -1.48
BRCA1P38398 AL607077.1-201ENST00000401718 499 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 RN7SKP16-201ENST00000410180 299 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 AC009237.10-201ENST00000414112 510 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 AC009237.5-201ENST00000414271 501 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.79□□□□□ -1.48
BRCA1P38398 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.79□□□□□ -1.48
BRCA1P38398 SCARNA10-201ENST00000459255 330 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.79□□□□□ -1.48
BRCA1P38398 OR8Q1P-201ENST00000526467 655 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 MTCYBP13-201ENST00000578634 1093 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 AC067931.1-201ENST00000624190 671 ntBASIC5.79□□□□□ -1.48
BRCA1P38398 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC5.79□□□□□ -1.48
BRCA1P38398 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
BRCA1P38398 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
BRCA1P38398 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.79□□□□□ -1.48
BRCA1P38398 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC5.78□□□□□ -1.48
BRCA1P38398 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.78□□□□□ -1.48
BRCA1P38398 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.78□□□□□ -1.48
BRCA1P38398 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
BRCA1P38398 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 AC008033.1-201ENST00000216407 1162 ntBASIC5.78□□□□□ -1.48
BRCA1P38398 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.78□□□□□ -1.48
BRCA1P38398 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
BRCA1P38398 RAB9AP4-201ENST00000415230 609 ntBASIC5.78□□□□□ -1.48
BRCA1P38398 RPS17P8-201ENST00000434525 335 ntBASIC5.78□□□□□ -1.48
BRCA1P38398 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.78□□□□□ -1.48
BRCA1P38398 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.78□□□□□ -1.48
BRCA1P38398 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.78□□□□□ -1.48
BRCA1P38398 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.78□□□□□ -1.48
BRCA1P38398 AL049840.6-202ENST00000603373 279 ntBASIC5.78□□□□□ -1.48
BRCA1P38398 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
BRCA1P38398 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
BRCA1P38398 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.78□□□□□ -1.48
BRCA1P38398 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
BRCA1P38398 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.78□□□□□ -1.48
BRCA1P38398 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC5.77□□□□□ -1.49
BRCA1P38398 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
BRCA1P38398 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
BRCA1P38398 ARL4AP5-201ENST00000404372 599 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 AC090058.1-201ENST00000498788 435 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 ENPP7P11-201ENST00000505915 627 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.77□□□□□ -1.49
BRCA1P38398 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.77□□□□□ -1.49
BRCA1P38398 AC084783.1-201ENST00000565846 910 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.77□□□□□ -1.49
BRCA1P38398 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.77□□□□□ -1.49
BRCA1P38398 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.77□□□□□ -1.49
BRCA1P38398 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
BRCA1P38398 AC023043.4-201ENST00000612081 449 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.77□□□□□ -1.49
BRCA1P38398 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
BRCA1P38398 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.77□□□□□ -1.49
BRCA1P38398 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
BRCA1P38398 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.77□□□□□ -1.49
BRCA1P38398 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.77□□□□□ -1.49
BRCA1P38398 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
BRCA1P38398 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
BRCA1P38398 AC135352.1-201ENST00000506173 1418 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.77□□□□□ -1.49
BRCA1P38398 AC007618.1-201ENST00000366455 732 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 RPL23AP26-201ENST00000412728 464 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
BRCA1P38398 VN1R37P-201ENST00000419096 748 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 COX6CP15-201ENST00000426313 211 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.77□□□□□ -1.49
BRCA1P38398 UQCRHP4-201ENST00000471686 272 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 TPT1P3-201ENST00000492841 512 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 AP001160.4-201ENST00000596971 382 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 AP001267.4-201ENST00000602598 545 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.77□□□□□ -1.49
BRCA1P38398 AL049794.2-201ENST00000616301 365 ntBASIC5.77□□□□□ -1.49
BRCA1P38398 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
BRCA1P38398 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.76□□□□□ -1.49
BRCA1P38398 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
BRCA1P38398 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
BRCA1P38398 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
BRCA1P38398 AC090220.1-201ENST00000593078 1699 ntBASIC5.76□□□□□ -1.49
BRCA1P38398 EIF4A1P3-201ENST00000411521 244 ntBASIC5.76□□□□□ -1.49
BRCA1P38398 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms