Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 TMCC1-201ENST00000393238 5992 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 AP005432.1-201ENST00000580891 3485 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 ZNF100-202ENST00000358296 5745 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 PRKG1-204ENST00000373985 6487 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 AC007529.1-201ENST00000418574 2178 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 WBP11P1-201ENST00000562560 1931 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 OR1F12-201ENST00000402365 945 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.77□□□□□ -1.65
COL6A3P12111 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC4.77□□□□□ -1.65
COL6A3P12111 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 AC073137.1-201ENST00000605636 634 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 TBCK-201ENST00000273980 8101 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A3P12111 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A3P12111 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC4.77□□□□□ -1.65
COL6A3P12111 HMGN1P9-201ENST00000515212 298 ntBASIC4.77□□□□□ -1.65
COL6A3P12111 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 PCDH19-203ENST00000420881 7936 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
COL6A3P12111 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC4.77□□□□□ -1.65
COL6A3P12111 PCDH15-210ENST00000395438 5806 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 SCAPER-202ENST00000324767 4707 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 NACA3P-201ENST00000359690 648 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 U8.11-201ENST00000384699 133 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 U8.12-201ENST00000384701 133 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 RPL21P17-201ENST00000397467 475 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 U8.18-201ENST00000459285 133 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 SNORD125-201ENST00000459538 96 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 FTH1P9-201ENST00000513251 355 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 RNA5SP49-201ENST00000516450 115 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 SCARNA15.3-201ENST00000626315 122 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 SCARNA4.1-201ENST00000628597 123 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 EIF4G3-201ENST00000264211 5802 ntAPPRIS P3 TSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 AC008758.3-201ENST00000507003 1829 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 LARP1B-201ENST00000326639 4891 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 AC138907.8-201ENST00000623981 2256 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL6A3P12111 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.76□□□□□ -1.65
COL6A3P12111 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC4.76□□□□□ -1.65
COL6A3P12111 AL159987.2-201ENST00000432754 307 ntBASIC4.76□□□□□ -1.65
COL6A3P12111 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.76□□□□□ -1.65
COL6A3P12111 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.76□□□□□ -1.65
COL6A3P12111 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.76□□□□□ -1.65
COL6A3P12111 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC4.76□□□□□ -1.65
COL6A3P12111 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
COL6A3P12111 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
COL6A3P12111 BCOR-203ENST00000378455 6338 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
COL6A3P12111 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.75□□□□□ -1.65
COL6A3P12111 RNU6-301P-201ENST00000384277 107 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.75□□□□□ -1.65
COL6A3P12111 AL450023.3-201ENST00000440592 271 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 LINC02210-201ENST00000444561 288 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 RPL7L1P13-201ENST00000511702 739 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.75□□□□□ -1.65
COL6A3P12111 AL352984.2-202ENST00000613699 155 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC4.75□□□□□ -1.65
COL6A3P12111 DDX18P6-201ENST00000450119 1997 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 ARHGAP19-202ENST00000358531 5463 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC4.75□□□□□ -1.65
COL6A3P12111 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.75□□□□□ -1.65
COL6A3P12111 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL6A3P12111 AL121977.1-201ENST00000401636 979 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 PDSS1P2-201ENST00000449397 678 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 AC022360.1-201ENST00000521058 340 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 AC130364.2-201ENST00000528639 604 ntBASIC4.75□□□□□ -1.65
COL6A3P12111 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms